Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SLC28A1O00337 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SLC28A1O00337 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
SLC28A1O00337 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SLC28A1O00337 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.6■□□□□ 0.89
SLC28A1O00337 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.6■□□□□ 0.89
SLC28A1O00337 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
SLC28A1O00337 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SLC28A1O00337 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SLC28A1O00337 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SLC28A1O00337 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SLC28A1O00337 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.59■□□□□ 0.89
SLC28A1O00337 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC28A1O00337 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC28A1O00337 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC28A1O00337 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.59■□□□□ 0.89
SLC28A1O00337 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC28A1O00337 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SLC28A1O00337 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
SLC28A1O00337 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.59■□□□□ 0.89
SLC28A1O00337 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
SLC28A1O00337 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC28A1O00337 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC28A1O00337 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SLC28A1O00337 AC005229.4-201ENST00000610085 2198 ntBASIC20.59■□□□□ 0.89
SLC28A1O00337 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC28A1O00337 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SLC28A1O00337 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.58■□□□□ 0.89
SLC28A1O00337 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SLC28A1O00337 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SLC28A1O00337 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.58■□□□□ 0.89
SLC28A1O00337 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.58■□□□□ 0.89
SLC28A1O00337 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.58■□□□□ 0.88
SLC28A1O00337 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SLC28A1O00337 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.57■□□□□ 0.88
SLC28A1O00337 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SLC28A1O00337 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SLC28A1O00337 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.57■□□□□ 0.88
SLC28A1O00337 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.57■□□□□ 0.88
SLC28A1O00337 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.57■□□□□ 0.88
SLC28A1O00337 SLC47A1P1-202ENST00000449666 945 ntBASIC20.57■□□□□ 0.88
SLC28A1O00337 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.57■□□□□ 0.88
SLC28A1O00337 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SLC28A1O00337 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SLC28A1O00337 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.57■□□□□ 0.88
SLC28A1O00337 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SLC28A1O00337 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SLC28A1O00337 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC28A1O00337 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC28A1O00337 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC28A1O00337 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.56■□□□□ 0.88
SLC28A1O00337 FEM1AP4-201ENST00000443167 1987 ntBASIC20.56■□□□□ 0.88
SLC28A1O00337 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
SLC28A1O00337 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC28A1O00337 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SLC28A1O00337 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC28A1O00337 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
SLC28A1O00337 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SLC28A1O00337 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC28A1O00337 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.55■□□□□ 0.88
SLC28A1O00337 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SLC28A1O00337 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC28A1O00337 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.55■□□□□ 0.88
SLC28A1O00337 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC28A1O00337 AP004607.7-201ENST00000527152 1677 ntBASIC20.55■□□□□ 0.88
SLC28A1O00337 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC28A1O00337 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
SLC28A1O00337 AC131281.2-201ENST00000520478 145 ntBASIC20.55■□□□□ 0.88
SLC28A1O00337 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.55■□□□□ 0.88
SLC28A1O00337 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC28A1O00337 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SLC28A1O00337 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SLC28A1O00337 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
SLC28A1O00337 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SLC28A1O00337 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.54■□□□□ 0.88
SLC28A1O00337 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A1O00337 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.54■□□□□ 0.88
SLC28A1O00337 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A1O00337 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A1O00337 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A1O00337 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A1O00337 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A1O00337 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
SLC28A1O00337 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A1O00337 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A1O00337 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A1O00337 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A1O00337 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A1O00337 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC28A1O00337 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC28A1O00337 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SLC28A1O00337 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC28A1O00337 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SLC28A1O00337 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.53■□□□□ 0.88
SLC28A1O00337 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SLC28A1O00337 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SLC28A1O00337 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.53■□□□□ 0.88
SLC28A1O00337 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC28A1O00337 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC28A1O00337 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms