Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC188H7C350 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC22.25■■□□□ 1.15
CCDC188H7C350 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC22.25■■□□□ 1.15
CCDC188H7C350 AC010997.5-201ENST00000609182 354 ntBASIC22.25■■□□□ 1.15
CCDC188H7C350 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC22.25■■□□□ 1.15
CCDC188H7C350 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC188H7C350 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC188H7C350 AC133637.1-201ENST00000624115 1537 ntBASIC22.25■■□□□ 1.15
CCDC188H7C350 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC22.25■■□□□ 1.15
CCDC188H7C350 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC188H7C350 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC22.25■■□□□ 1.15
CCDC188H7C350 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC188H7C350 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC188H7C350 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
CCDC188H7C350 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC188H7C350 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC22.24■■□□□ 1.15
CCDC188H7C350 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC22.24■■□□□ 1.15
CCDC188H7C350 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC188H7C350 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC188H7C350 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC22.24■■□□□ 1.15
CCDC188H7C350 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC188H7C350 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC22.24■■□□□ 1.15
CCDC188H7C350 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC188H7C350 AL451085.2-201ENST00000605085 799 ntBASIC22.24■■□□□ 1.15
CCDC188H7C350 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC22.24■■□□□ 1.15
CCDC188H7C350 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC22.24■■□□□ 1.15
CCDC188H7C350 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC188H7C350 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC188H7C350 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC188H7C350 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC188H7C350 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC188H7C350 DYM-203ENST00000442713 2147 ntTSL 2 BASIC22.24■■□□□ 1.15
CCDC188H7C350 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC188H7C350 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC188H7C350 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC188H7C350 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC22.23■■□□□ 1.15
CCDC188H7C350 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC188H7C350 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC188H7C350 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
CCDC188H7C350 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC22.23■■□□□ 1.15
CCDC188H7C350 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC188H7C350 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.15
CCDC188H7C350 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC188H7C350 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC188H7C350 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC22.22■■□□□ 1.15
CCDC188H7C350 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC188H7C350 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC188H7C350 MIR4787-201ENST00000607364 84 ntBASIC22.22■■□□□ 1.15
CCDC188H7C350 AL117332.1-201ENST00000622628 974 ntBASIC22.22■■□□□ 1.15
CCDC188H7C350 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC188H7C350 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC188H7C350 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC22.22■■□□□ 1.15
CCDC188H7C350 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC188H7C350 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
CCDC188H7C350 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC188H7C350 STX4-202ENST00000394998 1498 ntTSL 2 BASIC22.22■■□□□ 1.15
CCDC188H7C350 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC22.21■■□□□ 1.15
CCDC188H7C350 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC188H7C350 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC22.21■■□□□ 1.15
CCDC188H7C350 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC22.21■■□□□ 1.15
CCDC188H7C350 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC188H7C350 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC188H7C350 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC188H7C350 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC188H7C350 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC22.21■■□□□ 1.15
CCDC188H7C350 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
CCDC188H7C350 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC188H7C350 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC22.21■■□□□ 1.15
CCDC188H7C350 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC188H7C350 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
CCDC188H7C350 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC22.21■■□□□ 1.15
CCDC188H7C350 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC22.21■■□□□ 1.15
CCDC188H7C350 PARN-205ENST00000539279 1557 ntTSL 2 BASIC22.21■■□□□ 1.15
CCDC188H7C350 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.15
CCDC188H7C350 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.15
CCDC188H7C350 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC188H7C350 AL049796.1-201ENST00000565336 1766 ntBASIC22.2■■□□□ 1.14
CCDC188H7C350 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC188H7C350 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC188H7C350 LSM4-201ENST00000252816 986 ntTSL 2 BASIC22.2■■□□□ 1.14
CCDC188H7C350 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
CCDC188H7C350 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC188H7C350 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC188H7C350 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC22.2■■□□□ 1.14
CCDC188H7C350 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC188H7C350 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.14
CCDC188H7C350 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
CCDC188H7C350 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC188H7C350 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC188H7C350 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC188H7C350 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC22.19■■□□□ 1.14
CCDC188H7C350 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC22.19■■□□□ 1.14
CCDC188H7C350 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC22.19■■□□□ 1.14
CCDC188H7C350 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC22.19■■□□□ 1.14
CCDC188H7C350 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC22.19■■□□□ 1.14
CCDC188H7C350 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC188H7C350 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC188H7C350 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC22.19■■□□□ 1.14
CCDC188H7C350 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC188H7C350 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC22.18■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms