Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4LA6NMK7 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4LA6NMK7 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4LA6NMK7 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.72■□□□□ 0.75
CPSF4LA6NMK7 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
CPSF4LA6NMK7 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4LA6NMK7 AC010141.3-201ENST00000456659 717 ntBASIC19.72■□□□□ 0.75
CPSF4LA6NMK7 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4LA6NMK7 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.72■□□□□ 0.75
CPSF4LA6NMK7 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4LA6NMK7 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
CPSF4LA6NMK7 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4LA6NMK7 Z98882.1-201ENST00000622160 2253 ntBASIC19.72■□□□□ 0.75
CPSF4LA6NMK7 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CPSF4LA6NMK7 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CPSF4LA6NMK7 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.71■□□□□ 0.75
CPSF4LA6NMK7 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.71■□□□□ 0.75
CPSF4LA6NMK7 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
CPSF4LA6NMK7 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.71■□□□□ 0.75
CPSF4LA6NMK7 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CPSF4LA6NMK7 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.71■□□□□ 0.75
CPSF4LA6NMK7 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CPSF4LA6NMK7 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.71■□□□□ 0.75
CPSF4LA6NMK7 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.71■□□□□ 0.75
CPSF4LA6NMK7 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.71■□□□□ 0.75
CPSF4LA6NMK7 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.71■□□□□ 0.75
CPSF4LA6NMK7 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CPSF4LA6NMK7 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CPSF4LA6NMK7 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CPSF4LA6NMK7 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.7■□□□□ 0.74
CPSF4LA6NMK7 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CPSF4LA6NMK7 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
CPSF4LA6NMK7 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.7■□□□□ 0.74
CPSF4LA6NMK7 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.7■□□□□ 0.74
CPSF4LA6NMK7 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.7■□□□□ 0.74
CPSF4LA6NMK7 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CPSF4LA6NMK7 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CPSF4LA6NMK7 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CPSF4LA6NMK7 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.7■□□□□ 0.74
CPSF4LA6NMK7 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CPSF4LA6NMK7 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CPSF4LA6NMK7 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CPSF4LA6NMK7 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
CPSF4LA6NMK7 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
CPSF4LA6NMK7 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.69■□□□□ 0.74
CPSF4LA6NMK7 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.69■□□□□ 0.74
CPSF4LA6NMK7 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CPSF4LA6NMK7 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CPSF4LA6NMK7 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CPSF4LA6NMK7 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.69■□□□□ 0.74
CPSF4LA6NMK7 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
CPSF4LA6NMK7 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.69■□□□□ 0.74
CPSF4LA6NMK7 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CPSF4LA6NMK7 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.69■□□□□ 0.74
CPSF4LA6NMK7 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CPSF4LA6NMK7 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CPSF4LA6NMK7 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CPSF4LA6NMK7 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.68■□□□□ 0.74
CPSF4LA6NMK7 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CPSF4LA6NMK7 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CPSF4LA6NMK7 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CPSF4LA6NMK7 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.68■□□□□ 0.74
CPSF4LA6NMK7 AC131281.2-201ENST00000520478 145 ntBASIC19.68■□□□□ 0.74
CPSF4LA6NMK7 DUX4L19-201ENST00000557448 1267 ntBASIC19.68■□□□□ 0.74
CPSF4LA6NMK7 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.68■□□□□ 0.74
CPSF4LA6NMK7 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.68■□□□□ 0.74
CPSF4LA6NMK7 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CPSF4LA6NMK7 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CPSF4LA6NMK7 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CPSF4LA6NMK7 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4LA6NMK7 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4LA6NMK7 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4LA6NMK7 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.67■□□□□ 0.74
CPSF4LA6NMK7 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CPSF4LA6NMK7 OXCT2P1-201ENST00000447263 1535 ntBASIC19.67■□□□□ 0.74
CPSF4LA6NMK7 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.67■□□□□ 0.74
CPSF4LA6NMK7 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.67■□□□□ 0.74
CPSF4LA6NMK7 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4LA6NMK7 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.67■□□□□ 0.74
CPSF4LA6NMK7 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4LA6NMK7 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4LA6NMK7 AL138724.1-201ENST00000606771 1088 ntBASIC19.67■□□□□ 0.74
CPSF4LA6NMK7 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4LA6NMK7 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4LA6NMK7 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4LA6NMK7 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4LA6NMK7 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.66■□□□□ 0.74
CPSF4LA6NMK7 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CPSF4LA6NMK7 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CPSF4LA6NMK7 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.66■□□□□ 0.74
CPSF4LA6NMK7 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CPSF4LA6NMK7 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CPSF4LA6NMK7 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
CPSF4LA6NMK7 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.66■□□□□ 0.74
CPSF4LA6NMK7 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.66■□□□□ 0.74
CPSF4LA6NMK7 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.66■□□□□ 0.74
CPSF4LA6NMK7 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
CPSF4LA6NMK7 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CPSF4LA6NMK7 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
CPSF4LA6NMK7 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms