Protein–RNA interactions for Protein: Q9UBI1

COMMD3, COMM domain-containing protein 3, humanhuman

Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3Q9UBI1 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
COMMD3Q9UBI1 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
COMMD3Q9UBI1 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.83■□□□□ 0.61
COMMD3Q9UBI1 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COMMD3Q9UBI1 FEM1AP1-201ENST00000431297 1995 ntBASIC18.83■□□□□ 0.61
COMMD3Q9UBI1 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
COMMD3Q9UBI1 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.6
COMMD3Q9UBI1 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COMMD3Q9UBI1 DUX4L9-201ENST00000449051 1259 ntBASIC18.83■□□□□ 0.6
COMMD3Q9UBI1 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COMMD3Q9UBI1 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
COMMD3Q9UBI1 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COMMD3Q9UBI1 AF131216.4-201ENST00000638924 1588 ntBASIC18.83■□□□□ 0.6
COMMD3Q9UBI1 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COMMD3Q9UBI1 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COMMD3Q9UBI1 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COMMD3Q9UBI1 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COMMD3Q9UBI1 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COMMD3Q9UBI1 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COMMD3Q9UBI1 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COMMD3Q9UBI1 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COMMD3Q9UBI1 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COMMD3Q9UBI1 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COMMD3Q9UBI1 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COMMD3Q9UBI1 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COMMD3Q9UBI1 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
COMMD3Q9UBI1 MIR639-201ENST00000384974 98 ntBASIC18.82■□□□□ 0.6
COMMD3Q9UBI1 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC18.82■□□□□ 0.6
COMMD3Q9UBI1 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COMMD3Q9UBI1 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COMMD3Q9UBI1 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
COMMD3Q9UBI1 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COMMD3Q9UBI1 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COMMD3Q9UBI1 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COMMD3Q9UBI1 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.82■□□□□ 0.6
COMMD3Q9UBI1 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COMMD3Q9UBI1 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
COMMD3Q9UBI1 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
COMMD3Q9UBI1 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
COMMD3Q9UBI1 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COMMD3Q9UBI1 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COMMD3Q9UBI1 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.81■□□□□ 0.6
COMMD3Q9UBI1 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COMMD3Q9UBI1 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.81■□□□□ 0.6
COMMD3Q9UBI1 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC18.81■□□□□ 0.6
COMMD3Q9UBI1 CA15P2-201ENST00000611168 834 ntBASIC18.81■□□□□ 0.6
COMMD3Q9UBI1 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
COMMD3Q9UBI1 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COMMD3Q9UBI1 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COMMD3Q9UBI1 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
COMMD3Q9UBI1 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COMMD3Q9UBI1 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.81■□□□□ 0.6
COMMD3Q9UBI1 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
COMMD3Q9UBI1 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
COMMD3Q9UBI1 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
COMMD3Q9UBI1 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COMMD3Q9UBI1 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COMMD3Q9UBI1 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
COMMD3Q9UBI1 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.8■□□□□ 0.6
COMMD3Q9UBI1 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COMMD3Q9UBI1 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COMMD3Q9UBI1 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COMMD3Q9UBI1 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC18.8■□□□□ 0.6
COMMD3Q9UBI1 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COMMD3Q9UBI1 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COMMD3Q9UBI1 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.8■□□□□ 0.6
COMMD3Q9UBI1 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COMMD3Q9UBI1 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COMMD3Q9UBI1 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
COMMD3Q9UBI1 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COMMD3Q9UBI1 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC18.8■□□□□ 0.6
COMMD3Q9UBI1 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COMMD3Q9UBI1 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.79■□□□□ 0.6
COMMD3Q9UBI1 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
COMMD3Q9UBI1 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COMMD3Q9UBI1 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COMMD3Q9UBI1 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
COMMD3Q9UBI1 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC18.79■□□□□ 0.6
COMMD3Q9UBI1 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
COMMD3Q9UBI1 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC18.79■□□□□ 0.6
COMMD3Q9UBI1 AC009086.3-201ENST00000623486 1008 ntBASIC18.79■□□□□ 0.6
COMMD3Q9UBI1 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COMMD3Q9UBI1 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
COMMD3Q9UBI1 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
COMMD3Q9UBI1 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COMMD3Q9UBI1 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COMMD3Q9UBI1 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
COMMD3Q9UBI1 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COMMD3Q9UBI1 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
COMMD3Q9UBI1 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
COMMD3Q9UBI1 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
COMMD3Q9UBI1 AC022616.5-201ENST00000518796 181 ntBASIC18.78■□□□□ 0.6
COMMD3Q9UBI1 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.78■□□□□ 0.6
COMMD3Q9UBI1 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.78■□□□□ 0.6
COMMD3Q9UBI1 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COMMD3Q9UBI1 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.78■□□□□ 0.6
COMMD3Q9UBI1 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
COMMD3Q9UBI1 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
COMMD3Q9UBI1 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
COMMD3Q9UBI1 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms