Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
NKX3-1Q99801 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC18.66■□□□□ 0.58
NKX3-1Q99801 Z98882.1-201ENST00000622160 2253 ntBASIC18.66■□□□□ 0.58
NKX3-1Q99801 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NKX3-1Q99801 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
NKX3-1Q99801 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
NKX3-1Q99801 UNC93B8-201ENST00000511903 705 ntBASIC18.66■□□□□ 0.58
NKX3-1Q99801 EXOG-217ENST00000630638 197 ntTSL 5 BASIC18.66■□□□□ 0.58
NKX3-1Q99801 AC244015.2-201ENST00000616358 1861 ntBASIC18.66■□□□□ 0.58
NKX3-1Q99801 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NKX3-1Q99801 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.66■□□□□ 0.58
NKX3-1Q99801 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NKX3-1Q99801 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
NKX3-1Q99801 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NKX3-1Q99801 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
NKX3-1Q99801 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
NKX3-1Q99801 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NKX3-1Q99801 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NKX3-1Q99801 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
NKX3-1Q99801 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NKX3-1Q99801 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NKX3-1Q99801 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
NKX3-1Q99801 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC18.65■□□□□ 0.58
NKX3-1Q99801 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC18.65■□□□□ 0.58
NKX3-1Q99801 AC073130.3-201ENST00000624389 2278 ntBASIC18.65■□□□□ 0.58
NKX3-1Q99801 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.65■□□□□ 0.58
NKX3-1Q99801 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC18.65■□□□□ 0.58
NKX3-1Q99801 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC18.65■□□□□ 0.58
NKX3-1Q99801 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC18.65■□□□□ 0.58
NKX3-1Q99801 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.65■□□□□ 0.58
NKX3-1Q99801 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NKX3-1Q99801 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
NKX3-1Q99801 AL157384.1-201ENST00000445995 2473 ntBASIC18.65■□□□□ 0.58
NKX3-1Q99801 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NKX3-1Q99801 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NKX3-1Q99801 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
NKX3-1Q99801 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NKX3-1Q99801 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NKX3-1Q99801 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NKX3-1Q99801 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
NKX3-1Q99801 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NKX3-1Q99801 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
NKX3-1Q99801 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NKX3-1Q99801 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
NKX3-1Q99801 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NKX3-1Q99801 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
NKX3-1Q99801 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NKX3-1Q99801 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NKX3-1Q99801 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
NKX3-1Q99801 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
NKX3-1Q99801 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC18.64■□□□□ 0.57
NKX3-1Q99801 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC18.64■□□□□ 0.57
NKX3-1Q99801 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
NKX3-1Q99801 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC18.64■□□□□ 0.57
NKX3-1Q99801 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.64■□□□□ 0.57
NKX3-1Q99801 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC18.64■□□□□ 0.57
NKX3-1Q99801 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NKX3-1Q99801 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NKX3-1Q99801 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
NKX3-1Q99801 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NKX3-1Q99801 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NKX3-1Q99801 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC18.63■□□□□ 0.57
NKX3-1Q99801 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX3-1Q99801 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX3-1Q99801 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX3-1Q99801 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.63■□□□□ 0.57
NKX3-1Q99801 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX3-1Q99801 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX3-1Q99801 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NKX3-1Q99801 AC006455.2-201ENST00000429931 906 ntBASIC18.63■□□□□ 0.57
NKX3-1Q99801 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.63■□□□□ 0.57
NKX3-1Q99801 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NKX3-1Q99801 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
NKX3-1Q99801 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX3-1Q99801 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC18.63■□□□□ 0.57
NKX3-1Q99801 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX3-1Q99801 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX3-1Q99801 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX3-1Q99801 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NKX3-1Q99801 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX3-1Q99801 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.62■□□□□ 0.57
NKX3-1Q99801 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX3-1Q99801 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX3-1Q99801 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX3-1Q99801 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC18.62■□□□□ 0.57
NKX3-1Q99801 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
NKX3-1Q99801 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
NKX3-1Q99801 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX3-1Q99801 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX3-1Q99801 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NKX3-1Q99801 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX3-1Q99801 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX3-1Q99801 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC18.62■□□□□ 0.57
NKX3-1Q99801 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC18.62■□□□□ 0.57
NKX3-1Q99801 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.62■□□□□ 0.57
NKX3-1Q99801 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX3-1Q99801 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX3-1Q99801 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
NKX3-1Q99801 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX3-1Q99801 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms