Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC14.69□□□□□ -0.06
ALMS1Q8TCU4 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
ALMS1Q8TCU4 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
ALMS1Q8TCU4 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC14.69□□□□□ -0.06
ALMS1Q8TCU4 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC14.69□□□□□ -0.06
ALMS1Q8TCU4 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
ALMS1Q8TCU4 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
ALMS1Q8TCU4 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
ALMS1Q8TCU4 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
ALMS1Q8TCU4 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
ALMS1Q8TCU4 BX088651.1-201ENST00000540551 451 ntBASIC14.68□□□□□ -0.06
ALMS1Q8TCU4 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
ALMS1Q8TCU4 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
ALMS1Q8TCU4 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
ALMS1Q8TCU4 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
ALMS1Q8TCU4 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
ALMS1Q8TCU4 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC14.68□□□□□ -0.06
ALMS1Q8TCU4 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
ALMS1Q8TCU4 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC14.68□□□□□ -0.06
ALMS1Q8TCU4 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC14.68□□□□□ -0.06
ALMS1Q8TCU4 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
ALMS1Q8TCU4 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC14.68□□□□□ -0.06
ALMS1Q8TCU4 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC14.68□□□□□ -0.06
ALMS1Q8TCU4 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
ALMS1Q8TCU4 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC14.68□□□□□ -0.06
ALMS1Q8TCU4 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
ALMS1Q8TCU4 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
ALMS1Q8TCU4 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC14.67□□□□□ -0.06
ALMS1Q8TCU4 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC14.67□□□□□ -0.06
ALMS1Q8TCU4 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC14.67□□□□□ -0.06
ALMS1Q8TCU4 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ALMS1Q8TCU4 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC14.67□□□□□ -0.06
ALMS1Q8TCU4 MDFI-202ENST00000373050 809 ntTSL 2 BASIC14.67□□□□□ -0.06
ALMS1Q8TCU4 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ALMS1Q8TCU4 AP003097.1-201ENST00000530657 1135 ntBASIC14.67□□□□□ -0.06
ALMS1Q8TCU4 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC14.67□□□□□ -0.06
ALMS1Q8TCU4 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC14.67□□□□□ -0.06
ALMS1Q8TCU4 SNORA78-201ENST00000459373 127 ntBASIC14.67□□□□□ -0.06
ALMS1Q8TCU4 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC14.67□□□□□ -0.06
ALMS1Q8TCU4 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC14.67□□□□□ -0.06
ALMS1Q8TCU4 Z99916.2-201ENST00000604037 246 ntBASIC14.67□□□□□ -0.06
ALMS1Q8TCU4 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
ALMS1Q8TCU4 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ALMS1Q8TCU4 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 AC233263.1-201ENST00000578059 224 ntBASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 AC069236.1-201ENST00000604339 616 ntBASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 AL359736.2-201ENST00000621992 437 ntBASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
ALMS1Q8TCU4 AC022211.4-201ENST00000625094 2161 ntBASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 RCN1P1-201ENST00000400413 996 ntBASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 SERPINH1P1-201ENST00000419794 1249 ntBASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
ALMS1Q8TCU4 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
ALMS1Q8TCU4 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ALMS1Q8TCU4 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ALMS1Q8TCU4 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ALMS1Q8TCU4 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ALMS1Q8TCU4 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ALMS1Q8TCU4 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms