Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00643Q86TS7 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LINC00643Q86TS7 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 AL161729.1-201ENST00000604104 1402 ntBASIC13.47□□□□□ -0.25
LINC00643Q86TS7 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 Z98882.1-201ENST00000622160 2253 ntBASIC13.47□□□□□ -0.25
LINC00643Q86TS7 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 EI24-213ENST00000618552 1747 ntTSL 5 BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 ME2-218ENST00000640965 2476 ntTSL 5 BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
LINC00643Q86TS7 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
LINC00643Q86TS7 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00643Q86TS7 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00643Q86TS7 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC13.46□□□□□ -0.25
LINC00643Q86TS7 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC13.46□□□□□ -0.25
LINC00643Q86TS7 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00643Q86TS7 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00643Q86TS7 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00643Q86TS7 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00643Q86TS7 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00643Q86TS7 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC13.46□□□□□ -0.25
LINC00643Q86TS7 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00643Q86TS7 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00643Q86TS7 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LINC00643Q86TS7 ALDH1A3-203ENST00000557963 1670 ntBASIC13.46□□□□□ -0.26
LINC00643Q86TS7 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
LINC00643Q86TS7 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
LINC00643Q86TS7 TNXA-203ENST00000507684 2038 ntBASIC13.46□□□□□ -0.26
LINC00643Q86TS7 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00643Q86TS7 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
LINC00643Q86TS7 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00643Q86TS7 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
LINC00643Q86TS7 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
LINC00643Q86TS7 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00643Q86TS7 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
LINC00643Q86TS7 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
LINC00643Q86TS7 GABARAPL3-202ENST00000624044 1851 ntBASIC13.45□□□□□ -0.26
LINC00643Q86TS7 DYNLL1-208ENST00000550178 581 ntBASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms