Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
SH3RF1Q7Z6J0 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC24.72■■□□□ 1.55
SH3RF1Q7Z6J0 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
SH3RF1Q7Z6J0 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
SH3RF1Q7Z6J0 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
SH3RF1Q7Z6J0 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
SH3RF1Q7Z6J0 AL355802.2-201ENST00000402069 882 ntBASIC24.71■■□□□ 1.55
SH3RF1Q7Z6J0 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC24.71■■□□□ 1.55
SH3RF1Q7Z6J0 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
SH3RF1Q7Z6J0 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
SH3RF1Q7Z6J0 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC24.71■■□□□ 1.55
SH3RF1Q7Z6J0 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
SH3RF1Q7Z6J0 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
SH3RF1Q7Z6J0 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC24.71■■□□□ 1.55
SH3RF1Q7Z6J0 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
SH3RF1Q7Z6J0 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
SH3RF1Q7Z6J0 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
SH3RF1Q7Z6J0 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
SH3RF1Q7Z6J0 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
SH3RF1Q7Z6J0 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC24.7■■□□□ 1.55
SH3RF1Q7Z6J0 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
SH3RF1Q7Z6J0 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
SH3RF1Q7Z6J0 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC24.7■■□□□ 1.54
SH3RF1Q7Z6J0 GALNS-213ENST00000569433 723 ntTSL 3 BASIC24.7■■□□□ 1.54
SH3RF1Q7Z6J0 AL499627.2-201ENST00000606283 725 ntBASIC24.7■■□□□ 1.54
SH3RF1Q7Z6J0 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC24.7■■□□□ 1.54
SH3RF1Q7Z6J0 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
SH3RF1Q7Z6J0 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC24.69■■□□□ 1.54
SH3RF1Q7Z6J0 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
SH3RF1Q7Z6J0 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
SH3RF1Q7Z6J0 CROCCP5-201ENST00000436658 830 ntBASIC24.69■■□□□ 1.54
SH3RF1Q7Z6J0 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC24.69■■□□□ 1.54
SH3RF1Q7Z6J0 OR2I1P-207ENST00000453522 948 ntBASIC24.69■■□□□ 1.54
SH3RF1Q7Z6J0 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC24.69■■□□□ 1.54
SH3RF1Q7Z6J0 DBI-210ENST00000542275 757 ntTSL 5 BASIC24.69■■□□□ 1.54
SH3RF1Q7Z6J0 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC24.69■■□□□ 1.54
SH3RF1Q7Z6J0 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC24.69■■□□□ 1.54
SH3RF1Q7Z6J0 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
SH3RF1Q7Z6J0 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
SH3RF1Q7Z6J0 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
SH3RF1Q7Z6J0 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
SH3RF1Q7Z6J0 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
SH3RF1Q7Z6J0 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
SH3RF1Q7Z6J0 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
SH3RF1Q7Z6J0 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
SH3RF1Q7Z6J0 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
SH3RF1Q7Z6J0 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC24.68■■□□□ 1.54
SH3RF1Q7Z6J0 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
SH3RF1Q7Z6J0 HSCB-202ENST00000398941 955 ntTSL 2 BASIC24.68■■□□□ 1.54
SH3RF1Q7Z6J0 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC24.68■■□□□ 1.54
SH3RF1Q7Z6J0 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC24.68■■□□□ 1.54
SH3RF1Q7Z6J0 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC24.68■■□□□ 1.54
SH3RF1Q7Z6J0 AL109923.1-201ENST00000618799 583 ntBASIC24.68■■□□□ 1.54
SH3RF1Q7Z6J0 TMEM191A-211ENST00000637163 1067 ntBASIC24.68■■□□□ 1.54
SH3RF1Q7Z6J0 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC24.68■■□□□ 1.54
SH3RF1Q7Z6J0 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC24.68■■□□□ 1.54
SH3RF1Q7Z6J0 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
SH3RF1Q7Z6J0 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
SH3RF1Q7Z6J0 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC24.67■■□□□ 1.54
SH3RF1Q7Z6J0 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
SH3RF1Q7Z6J0 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
SH3RF1Q7Z6J0 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
SH3RF1Q7Z6J0 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
SH3RF1Q7Z6J0 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
SH3RF1Q7Z6J0 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC24.67■■□□□ 1.54
SH3RF1Q7Z6J0 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC24.67■■□□□ 1.54
SH3RF1Q7Z6J0 GAS2L1P2-201ENST00000436355 1356 ntBASIC24.67■■□□□ 1.54
SH3RF1Q7Z6J0 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC24.66■■□□□ 1.54
SH3RF1Q7Z6J0 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC24.66■■□□□ 1.54
SH3RF1Q7Z6J0 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC24.66■■□□□ 1.54
SH3RF1Q7Z6J0 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC24.66■■□□□ 1.54
SH3RF1Q7Z6J0 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
SH3RF1Q7Z6J0 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC24.66■■□□□ 1.54
SH3RF1Q7Z6J0 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
SH3RF1Q7Z6J0 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
SH3RF1Q7Z6J0 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SH3RF1Q7Z6J0 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
SH3RF1Q7Z6J0 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SH3RF1Q7Z6J0 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SH3RF1Q7Z6J0 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC24.65■■□□□ 1.54
SH3RF1Q7Z6J0 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC24.65■■□□□ 1.54
SH3RF1Q7Z6J0 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SH3RF1Q7Z6J0 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
SH3RF1Q7Z6J0 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC24.65■■□□□ 1.54
SH3RF1Q7Z6J0 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC24.65■■□□□ 1.54
SH3RF1Q7Z6J0 AC092053.2-201ENST00000640557 1818 ntBASIC24.65■■□□□ 1.54
SH3RF1Q7Z6J0 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SH3RF1Q7Z6J0 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC24.65■■□□□ 1.54
SH3RF1Q7Z6J0 AC004687.1-201ENST00000579003 1625 ntBASIC24.64■■□□□ 1.54
SH3RF1Q7Z6J0 AP004607.4-201ENST00000530158 1459 ntBASIC24.64■■□□□ 1.54
SH3RF1Q7Z6J0 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.54
SH3RF1Q7Z6J0 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
SH3RF1Q7Z6J0 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
SH3RF1Q7Z6J0 LINC01960-201ENST00000563759 1884 ntBASIC24.64■■□□□ 1.54
SH3RF1Q7Z6J0 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
SH3RF1Q7Z6J0 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
SH3RF1Q7Z6J0 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC24.64■■□□□ 1.54
SH3RF1Q7Z6J0 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
SH3RF1Q7Z6J0 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
SH3RF1Q7Z6J0 MYB-221ENST00000527615 2381 ntTSL 5 BASIC24.64■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms