Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC17.78■□□□□ 0.44
CSPG4Q6UVK1 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.78■□□□□ 0.44
CSPG4Q6UVK1 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CSPG4Q6UVK1 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.78■□□□□ 0.44
CSPG4Q6UVK1 MYC-209ENST00000641252 345 ntBASIC17.78■□□□□ 0.44
CSPG4Q6UVK1 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CSPG4Q6UVK1 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CSPG4Q6UVK1 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CSPG4Q6UVK1 OXCT2P1-201ENST00000447263 1535 ntBASIC17.78■□□□□ 0.44
CSPG4Q6UVK1 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.78■□□□□ 0.44
CSPG4Q6UVK1 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CSPG4Q6UVK1 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.78■□□□□ 0.44
CSPG4Q6UVK1 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CSPG4Q6UVK1 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.78■□□□□ 0.44
CSPG4Q6UVK1 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CSPG4Q6UVK1 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CSPG4Q6UVK1 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CSPG4Q6UVK1 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC17.78■□□□□ 0.44
CSPG4Q6UVK1 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CSPG4Q6UVK1 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CSPG4Q6UVK1 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC17.77■□□□□ 0.44
CSPG4Q6UVK1 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC17.77■□□□□ 0.44
CSPG4Q6UVK1 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
CSPG4Q6UVK1 CASP6-205ENST00000505486 538 ntTSL 4 BASIC17.77■□□□□ 0.44
CSPG4Q6UVK1 MAX-217ENST00000557277 728 ntTSL 3 BASIC17.77■□□□□ 0.44
CSPG4Q6UVK1 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CSPG4Q6UVK1 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CSPG4Q6UVK1 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CSPG4Q6UVK1 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CSPG4Q6UVK1 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CSPG4Q6UVK1 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CSPG4Q6UVK1 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CSPG4Q6UVK1 AL158047.1-201ENST00000445918 881 ntBASIC17.77■□□□□ 0.43
CSPG4Q6UVK1 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CSPG4Q6UVK1 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CSPG4Q6UVK1 PREB-202ENST00000406567 1910 ntTSL 5 BASIC17.77■□□□□ 0.43
CSPG4Q6UVK1 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CSPG4Q6UVK1 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
CSPG4Q6UVK1 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CSPG4Q6UVK1 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
CSPG4Q6UVK1 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CSPG4Q6UVK1 UQCRFS1P1-201ENST00000435169 820 ntBASIC17.76■□□□□ 0.43
CSPG4Q6UVK1 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.76■□□□□ 0.43
CSPG4Q6UVK1 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
CSPG4Q6UVK1 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC17.76■□□□□ 0.43
CSPG4Q6UVK1 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CSPG4Q6UVK1 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CSPG4Q6UVK1 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CSPG4Q6UVK1 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CSPG4Q6UVK1 FAM210CP-201ENST00000445714 574 ntBASIC17.76■□□□□ 0.43
CSPG4Q6UVK1 RPS2P4-201ENST00000476944 856 ntBASIC17.76■□□□□ 0.43
CSPG4Q6UVK1 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CSPG4Q6UVK1 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC17.76■□□□□ 0.43
CSPG4Q6UVK1 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.76■□□□□ 0.43
CSPG4Q6UVK1 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC17.76■□□□□ 0.43
CSPG4Q6UVK1 AC016405.3-201ENST00000607710 860 ntBASIC17.76■□□□□ 0.43
CSPG4Q6UVK1 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 DUSP8P5-201ENST00000422884 1815 ntBASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 RHEB-204ENST00000472642 900 ntTSL 3 BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 AL139125.2-201ENST00000623134 1869 ntBASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 ECEL1P3-201ENST00000427961 737 ntBASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 AC010141.2-201ENST00000452426 721 ntBASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 AC128676.1-201ENST00000454392 318 ntBASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 MMD2-204ENST00000612910 778 ntTSL 5 BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.75■□□□□ 0.43
CSPG4Q6UVK1 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 AC006058.3-201ENST00000606217 1069 ntBASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms