Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC144BQ3MJ40 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
CCDC144BQ3MJ40 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
CCDC144BQ3MJ40 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC24.95■■□□□ 1.58
CCDC144BQ3MJ40 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC24.95■■□□□ 1.58
CCDC144BQ3MJ40 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC24.95■■□□□ 1.58
CCDC144BQ3MJ40 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CCDC144BQ3MJ40 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CCDC144BQ3MJ40 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CCDC144BQ3MJ40 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
CCDC144BQ3MJ40 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC24.95■■□□□ 1.58
CCDC144BQ3MJ40 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CCDC144BQ3MJ40 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CCDC144BQ3MJ40 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC24.94■■□□□ 1.58
CCDC144BQ3MJ40 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CCDC144BQ3MJ40 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC24.94■■□□□ 1.58
CCDC144BQ3MJ40 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC24.94■■□□□ 1.58
CCDC144BQ3MJ40 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC24.94■■□□□ 1.58
CCDC144BQ3MJ40 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC24.94■■□□□ 1.58
CCDC144BQ3MJ40 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC24.94■■□□□ 1.58
CCDC144BQ3MJ40 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CCDC144BQ3MJ40 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC24.94■■□□□ 1.58
CCDC144BQ3MJ40 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
CCDC144BQ3MJ40 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CCDC144BQ3MJ40 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CCDC144BQ3MJ40 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
CCDC144BQ3MJ40 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
CCDC144BQ3MJ40 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC24.93■■□□□ 1.58
CCDC144BQ3MJ40 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
CCDC144BQ3MJ40 TPRG1LP1-201ENST00000598702 760 ntBASIC24.93■■□□□ 1.58
CCDC144BQ3MJ40 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC24.93■■□□□ 1.58
CCDC144BQ3MJ40 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
CCDC144BQ3MJ40 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC24.93■■□□□ 1.58
CCDC144BQ3MJ40 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC24.93■■□□□ 1.58
CCDC144BQ3MJ40 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC144BQ3MJ40 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC24.92■■□□□ 1.58
CCDC144BQ3MJ40 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC24.92■■□□□ 1.58
CCDC144BQ3MJ40 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC24.92■■□□□ 1.58
CCDC144BQ3MJ40 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC24.92■■□□□ 1.58
CCDC144BQ3MJ40 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC144BQ3MJ40 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC24.92■■□□□ 1.58
CCDC144BQ3MJ40 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC24.91■■□□□ 1.58
CCDC144BQ3MJ40 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC144BQ3MJ40 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC24.91■■□□□ 1.58
CCDC144BQ3MJ40 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC24.91■■□□□ 1.58
CCDC144BQ3MJ40 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC144BQ3MJ40 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC144BQ3MJ40 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC144BQ3MJ40 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC24.91■■□□□ 1.58
CCDC144BQ3MJ40 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC24.91■■□□□ 1.58
CCDC144BQ3MJ40 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC24.91■■□□□ 1.58
CCDC144BQ3MJ40 GCA-201ENST00000233612 1694 ntTSL 2 BASIC24.91■■□□□ 1.58
CCDC144BQ3MJ40 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC144BQ3MJ40 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC144BQ3MJ40 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CCDC144BQ3MJ40 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC24.9■■□□□ 1.58
CCDC144BQ3MJ40 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CCDC144BQ3MJ40 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC24.9■■□□□ 1.58
CCDC144BQ3MJ40 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CCDC144BQ3MJ40 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CCDC144BQ3MJ40 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC24.9■■□□□ 1.58
CCDC144BQ3MJ40 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC24.9■■□□□ 1.58
CCDC144BQ3MJ40 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC24.9■■□□□ 1.58
CCDC144BQ3MJ40 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC24.9■■□□□ 1.58
CCDC144BQ3MJ40 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
CCDC144BQ3MJ40 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CCDC144BQ3MJ40 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
CCDC144BQ3MJ40 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC24.89■■□□□ 1.58
CCDC144BQ3MJ40 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC24.89■■□□□ 1.58
CCDC144BQ3MJ40 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
CCDC144BQ3MJ40 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC24.89■■□□□ 1.58
CCDC144BQ3MJ40 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
CCDC144BQ3MJ40 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC24.89■■□□□ 1.58
CCDC144BQ3MJ40 AC006015.1-201ENST00000429970 570 ntBASIC24.89■■□□□ 1.58
CCDC144BQ3MJ40 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC24.89■■□□□ 1.58
CCDC144BQ3MJ40 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
CCDC144BQ3MJ40 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC24.89■■□□□ 1.58
CCDC144BQ3MJ40 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC24.89■■□□□ 1.57
CCDC144BQ3MJ40 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
CCDC144BQ3MJ40 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
CCDC144BQ3MJ40 AC004687.1-201ENST00000579003 1625 ntBASIC24.89■■□□□ 1.57
CCDC144BQ3MJ40 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC24.89■■□□□ 1.57
CCDC144BQ3MJ40 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC24.89■■□□□ 1.57
CCDC144BQ3MJ40 AC079630.1-202ENST00000618127 1840 ntBASIC24.89■■□□□ 1.57
CCDC144BQ3MJ40 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC24.88■■□□□ 1.57
CCDC144BQ3MJ40 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
CCDC144BQ3MJ40 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
CCDC144BQ3MJ40 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
CCDC144BQ3MJ40 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
CCDC144BQ3MJ40 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC24.88■■□□□ 1.57
CCDC144BQ3MJ40 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
CCDC144BQ3MJ40 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC24.88■■□□□ 1.57
CCDC144BQ3MJ40 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC24.88■■□□□ 1.57
CCDC144BQ3MJ40 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC24.88■■□□□ 1.57
CCDC144BQ3MJ40 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC24.88■■□□□ 1.57
CCDC144BQ3MJ40 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC24.88■■□□□ 1.57
CCDC144BQ3MJ40 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC24.88■■□□□ 1.57
CCDC144BQ3MJ40 GALNS-213ENST00000569433 723 ntTSL 3 BASIC24.88■■□□□ 1.57
CCDC144BQ3MJ40 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC24.88■■□□□ 1.57
CCDC144BQ3MJ40 AC242852.2-201ENST00000615738 1807 ntBASIC24.88■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms