Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
COL28A1Q2UY09 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.6■□□□□ 0.89
COL28A1Q2UY09 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.6■□□□□ 0.89
COL28A1Q2UY09 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.6■□□□□ 0.89
COL28A1Q2UY09 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.6■□□□□ 0.89
COL28A1Q2UY09 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.6■□□□□ 0.89
COL28A1Q2UY09 AF201337.1-201ENST00000520239 748 ntBASIC20.6■□□□□ 0.89
COL28A1Q2UY09 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.6■□□□□ 0.89
COL28A1Q2UY09 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL28A1Q2UY09 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
COL28A1Q2UY09 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL28A1Q2UY09 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL28A1Q2UY09 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL28A1Q2UY09 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL28A1Q2UY09 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
COL28A1Q2UY09 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
COL28A1Q2UY09 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
COL28A1Q2UY09 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL28A1Q2UY09 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL28A1Q2UY09 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.59■□□□□ 0.89
COL28A1Q2UY09 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL28A1Q2UY09 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL28A1Q2UY09 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
COL28A1Q2UY09 GCSHP5-201ENST00000443090 522 ntBASIC20.59■□□□□ 0.89
COL28A1Q2UY09 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.59■□□□□ 0.89
COL28A1Q2UY09 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL28A1Q2UY09 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.59■□□□□ 0.89
COL28A1Q2UY09 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.59■□□□□ 0.89
COL28A1Q2UY09 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL28A1Q2UY09 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL28A1Q2UY09 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
COL28A1Q2UY09 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL28A1Q2UY09 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.58■□□□□ 0.89
COL28A1Q2UY09 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL28A1Q2UY09 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.58■□□□□ 0.89
COL28A1Q2UY09 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL28A1Q2UY09 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.58■□□□□ 0.89
COL28A1Q2UY09 AC105036.2-201ENST00000569468 176 ntBASIC20.58■□□□□ 0.89
COL28A1Q2UY09 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.58■□□□□ 0.89
COL28A1Q2UY09 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.58■□□□□ 0.88
COL28A1Q2UY09 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL28A1Q2UY09 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL28A1Q2UY09 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL28A1Q2UY09 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL28A1Q2UY09 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
COL28A1Q2UY09 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
COL28A1Q2UY09 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.57■□□□□ 0.88
COL28A1Q2UY09 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
COL28A1Q2UY09 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
COL28A1Q2UY09 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL28A1Q2UY09 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL28A1Q2UY09 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.57■□□□□ 0.88
COL28A1Q2UY09 AL158047.1-201ENST00000445918 881 ntBASIC20.57■□□□□ 0.88
COL28A1Q2UY09 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.57■□□□□ 0.88
COL28A1Q2UY09 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.57■□□□□ 0.88
COL28A1Q2UY09 SLC7A5P1-201ENST00000568957 537 ntBASIC20.57■□□□□ 0.88
COL28A1Q2UY09 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL28A1Q2UY09 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.57■□□□□ 0.88
COL28A1Q2UY09 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
COL28A1Q2UY09 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL28A1Q2UY09 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL28A1Q2UY09 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL28A1Q2UY09 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL28A1Q2UY09 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL28A1Q2UY09 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL28A1Q2UY09 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL28A1Q2UY09 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.56■□□□□ 0.88
COL28A1Q2UY09 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.56■□□□□ 0.88
COL28A1Q2UY09 AC079140.4-201ENST00000507448 529 ntBASIC20.56■□□□□ 0.88
COL28A1Q2UY09 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.56■□□□□ 0.88
COL28A1Q2UY09 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.56■□□□□ 0.88
COL28A1Q2UY09 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL28A1Q2UY09 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL28A1Q2UY09 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL28A1Q2UY09 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL28A1Q2UY09 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
COL28A1Q2UY09 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
COL28A1Q2UY09 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL28A1Q2UY09 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL28A1Q2UY09 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL28A1Q2UY09 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL28A1Q2UY09 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL28A1Q2UY09 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
COL28A1Q2UY09 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.55■□□□□ 0.88
COL28A1Q2UY09 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
COL28A1Q2UY09 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.55■□□□□ 0.88
COL28A1Q2UY09 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.55■□□□□ 0.88
COL28A1Q2UY09 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL28A1Q2UY09 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL28A1Q2UY09 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL28A1Q2UY09 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.54■□□□□ 0.88
COL28A1Q2UY09 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.54■□□□□ 0.88
COL28A1Q2UY09 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.54■□□□□ 0.88
COL28A1Q2UY09 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.54■□□□□ 0.88
COL28A1Q2UY09 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL28A1Q2UY09 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.54■□□□□ 0.88
COL28A1Q2UY09 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms