Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NKX3-2P78367 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
NKX3-2P78367 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
NKX3-2P78367 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
NKX3-2P78367 AL512625.2-201ENST00000417533 625 ntBASIC23.93■■□□□ 1.42
NKX3-2P78367 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
NKX3-2P78367 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC23.93■■□□□ 1.42
NKX3-2P78367 OR10C1-204ENST00000622521 1039 ntBASIC23.93■■□□□ 1.42
NKX3-2P78367 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
NKX3-2P78367 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC23.93■■□□□ 1.42
NKX3-2P78367 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NKX3-2P78367 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC23.93■■□□□ 1.42
NKX3-2P78367 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NKX3-2P78367 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NKX3-2P78367 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC23.92■■□□□ 1.42
NKX3-2P78367 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NKX3-2P78367 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC23.92■■□□□ 1.42
NKX3-2P78367 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
NKX3-2P78367 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NKX3-2P78367 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NKX3-2P78367 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC23.92■■□□□ 1.42
NKX3-2P78367 MIPEPP3-201ENST00000412105 444 ntBASIC23.92■■□□□ 1.42
NKX3-2P78367 CYP2T1P-201ENST00000432607 1285 ntBASIC23.92■■□□□ 1.42
NKX3-2P78367 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC23.92■■□□□ 1.42
NKX3-2P78367 PLLP-204ENST00000569059 665 ntTSL 3 BASIC23.92■■□□□ 1.42
NKX3-2P78367 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC23.92■■□□□ 1.42
NKX3-2P78367 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC23.92■■□□□ 1.42
NKX3-2P78367 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
NKX3-2P78367 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
NKX3-2P78367 AP006587.3-201ENST00000525742 1516 ntBASIC23.91■■□□□ 1.42
NKX3-2P78367 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
NKX3-2P78367 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
NKX3-2P78367 BET1L-204ENST00000410108 637 ntTSL 3 BASIC23.91■■□□□ 1.42
NKX3-2P78367 FAM201B-201ENST00000458407 597 ntBASIC23.91■■□□□ 1.42
NKX3-2P78367 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NKX3-2P78367 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NKX3-2P78367 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC23.91■■□□□ 1.42
NKX3-2P78367 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC23.9■■□□□ 1.42
NKX3-2P78367 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
NKX3-2P78367 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
NKX3-2P78367 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
NKX3-2P78367 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC23.9■■□□□ 1.42
NKX3-2P78367 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC23.9■■□□□ 1.42
NKX3-2P78367 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC23.9■■□□□ 1.42
NKX3-2P78367 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC23.9■■□□□ 1.42
NKX3-2P78367 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
NKX3-2P78367 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NKX3-2P78367 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NKX3-2P78367 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NKX3-2P78367 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC23.9■■□□□ 1.42
NKX3-2P78367 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NKX3-2P78367 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC23.89■■□□□ 1.42
NKX3-2P78367 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
NKX3-2P78367 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
NKX3-2P78367 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
NKX3-2P78367 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.42
NKX3-2P78367 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
NKX3-2P78367 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC23.89■■□□□ 1.41
NKX3-2P78367 PPP1R14BP2-201ENST00000426284 444 ntBASIC23.89■■□□□ 1.41
NKX3-2P78367 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC23.89■■□□□ 1.41
NKX3-2P78367 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC23.89■■□□□ 1.41
NKX3-2P78367 AC092118.2-201ENST00000613495 667 ntBASIC23.89■■□□□ 1.41
NKX3-2P78367 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
NKX3-2P78367 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
NKX3-2P78367 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
NKX3-2P78367 POU5F1P3-201ENST00000428824 1078 ntBASIC23.88■■□□□ 1.41
NKX3-2P78367 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC23.88■■□□□ 1.41
NKX3-2P78367 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC23.88■■□□□ 1.41
NKX3-2P78367 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NKX3-2P78367 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC23.88■■□□□ 1.41
NKX3-2P78367 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
NKX3-2P78367 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NKX3-2P78367 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NKX3-2P78367 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC23.87■■□□□ 1.41
NKX3-2P78367 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NKX3-2P78367 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC23.87■■□□□ 1.41
NKX3-2P78367 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC23.87■■□□□ 1.41
NKX3-2P78367 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
NKX3-2P78367 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NKX3-2P78367 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
NKX3-2P78367 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NKX3-2P78367 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
NKX3-2P78367 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
NKX3-2P78367 MKRN4P-201ENST00000444706 1521 ntBASIC23.86■■□□□ 1.41
NKX3-2P78367 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
NKX3-2P78367 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC23.86■■□□□ 1.41
NKX3-2P78367 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NKX3-2P78367 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
NKX3-2P78367 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC23.86■■□□□ 1.41
NKX3-2P78367 ITM2C-210ENST00000620962 501 ntBASIC23.86■■□□□ 1.41
NKX3-2P78367 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC23.86■■□□□ 1.41
NKX3-2P78367 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NKX3-2P78367 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
NKX3-2P78367 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
NKX3-2P78367 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NKX3-2P78367 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NKX3-2P78367 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NKX3-2P78367 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC23.85■■□□□ 1.41
NKX3-2P78367 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NKX3-2P78367 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms