Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXA1P55317 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXA1P55317 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXA1P55317 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
FOXA1P55317 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
FOXA1P55317 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXA1P55317 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXA1P55317 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.8■□□□□ 0.92
FOXA1P55317 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.8■□□□□ 0.92
FOXA1P55317 SERBP1P1-201ENST00000396021 1160 ntBASIC20.8■□□□□ 0.92
FOXA1P55317 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXA1P55317 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
FOXA1P55317 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.8■□□□□ 0.92
FOXA1P55317 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXA1P55317 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXA1P55317 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
FOXA1P55317 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
FOXA1P55317 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
FOXA1P55317 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
FOXA1P55317 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
FOXA1P55317 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
FOXA1P55317 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
FOXA1P55317 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.79■□□□□ 0.92
FOXA1P55317 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.79■□□□□ 0.92
FOXA1P55317 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.79■□□□□ 0.92
FOXA1P55317 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.79■□□□□ 0.92
FOXA1P55317 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.79■□□□□ 0.92
FOXA1P55317 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.79■□□□□ 0.92
FOXA1P55317 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA1P55317 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA1P55317 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA1P55317 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA1P55317 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA1P55317 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA1P55317 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.78■□□□□ 0.92
FOXA1P55317 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA1P55317 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.78■□□□□ 0.92
FOXA1P55317 AC010141.3-201ENST00000456659 717 ntBASIC20.78■□□□□ 0.92
FOXA1P55317 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA1P55317 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.78■□□□□ 0.92
FOXA1P55317 AC092171.4-201ENST00000609130 632 ntBASIC20.78■□□□□ 0.92
FOXA1P55317 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA1P55317 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA1P55317 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA1P55317 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA1P55317 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.78■□□□□ 0.92
FOXA1P55317 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
FOXA1P55317 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA1P55317 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
FOXA1P55317 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.77■□□□□ 0.92
FOXA1P55317 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.77■□□□□ 0.92
FOXA1P55317 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
FOXA1P55317 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
FOXA1P55317 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
FOXA1P55317 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.77■□□□□ 0.92
FOXA1P55317 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.77■□□□□ 0.92
FOXA1P55317 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.77■□□□□ 0.92
FOXA1P55317 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.77■□□□□ 0.92
FOXA1P55317 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
FOXA1P55317 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
FOXA1P55317 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
FOXA1P55317 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
FOXA1P55317 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.77■□□□□ 0.91
FOXA1P55317 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
FOXA1P55317 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
FOXA1P55317 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
FOXA1P55317 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
FOXA1P55317 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
FOXA1P55317 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.76■□□□□ 0.91
FOXA1P55317 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.76■□□□□ 0.91
FOXA1P55317 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.76■□□□□ 0.91
FOXA1P55317 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
FOXA1P55317 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.76■□□□□ 0.91
FOXA1P55317 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
FOXA1P55317 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.76■□□□□ 0.91
FOXA1P55317 OXCT2P1-201ENST00000447263 1535 ntBASIC20.76■□□□□ 0.91
FOXA1P55317 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.76■□□□□ 0.91
FOXA1P55317 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
FOXA1P55317 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
FOXA1P55317 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.76■□□□□ 0.91
FOXA1P55317 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.76■□□□□ 0.91
FOXA1P55317 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
FOXA1P55317 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
FOXA1P55317 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
FOXA1P55317 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
FOXA1P55317 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
FOXA1P55317 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
FOXA1P55317 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.75■□□□□ 0.91
FOXA1P55317 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.75■□□□□ 0.91
FOXA1P55317 AC087239.1-201ENST00000622671 572 ntBASIC20.75■□□□□ 0.91
FOXA1P55317 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
FOXA1P55317 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.75■□□□□ 0.91
FOXA1P55317 SYT6-210ENST00000641643 1587 ntBASIC20.75■□□□□ 0.91
FOXA1P55317 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.75■□□□□ 0.91
FOXA1P55317 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.75■□□□□ 0.91
FOXA1P55317 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.75■□□□□ 0.91
FOXA1P55317 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.75■□□□□ 0.91
FOXA1P55317 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
FOXA1P55317 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXA1P55317 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms