Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HLA-DMBP28068 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC16.33■□□□□ 0.2
HLA-DMBP28068 AL512631.2-201ENST00000604634 923 ntBASIC16.33■□□□□ 0.2
HLA-DMBP28068 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
HLA-DMBP28068 AL031602.1-201ENST00000633169 911 ntBASIC16.33■□□□□ 0.2
HLA-DMBP28068 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HLA-DMBP28068 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC16.33■□□□□ 0.2
HLA-DMBP28068 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HLA-DMBP28068 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
HLA-DMBP28068 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HLA-DMBP28068 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HLA-DMBP28068 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC16.33■□□□□ 0.2
HLA-DMBP28068 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
HLA-DMBP28068 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC16.33■□□□□ 0.2
HLA-DMBP28068 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HLA-DMBP28068 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DMBP28068 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DMBP28068 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DMBP28068 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DMBP28068 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DMBP28068 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HLA-DMBP28068 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DMBP28068 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DMBP28068 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
HLA-DMBP28068 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC16.32■□□□□ 0.2
HLA-DMBP28068 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HLA-DMBP28068 EI24-211ENST00000534546 1544 ntTSL 2 BASIC16.32■□□□□ 0.2
HLA-DMBP28068 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DMBP28068 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DMBP28068 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DMBP28068 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DMBP28068 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HLA-DMBP28068 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
HLA-DMBP28068 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HLA-DMBP28068 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC16.31■□□□□ 0.2
HLA-DMBP28068 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC16.31■□□□□ 0.2
HLA-DMBP28068 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HLA-DMBP28068 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
HLA-DMBP28068 USP45-205ENST00000472914 1617 ntTSL 5 BASIC16.31■□□□□ 0.2
HLA-DMBP28068 GATM-206ENST00000558336 1522 ntTSL 2 BASIC16.31■□□□□ 0.2
HLA-DMBP28068 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC16.31■□□□□ 0.2
HLA-DMBP28068 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HLA-DMBP28068 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC16.31■□□□□ 0.2
HLA-DMBP28068 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HLA-DMBP28068 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC16.31■□□□□ 0.2
HLA-DMBP28068 MIR3181-201ENST00000578512 73 ntBASIC16.31■□□□□ 0.2
HLA-DMBP28068 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC16.31■□□□□ 0.2
HLA-DMBP28068 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
HLA-DMBP28068 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HLA-DMBP28068 AC244015.2-201ENST00000616358 1861 ntBASIC16.31■□□□□ 0.2
HLA-DMBP28068 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HLA-DMBP28068 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HLA-DMBP28068 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC16.3■□□□□ 0.2
HLA-DMBP28068 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HLA-DMBP28068 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HLA-DMBP28068 STX4-202ENST00000394998 1498 ntTSL 2 BASIC16.3■□□□□ 0.2
HLA-DMBP28068 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HLA-DMBP28068 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HLA-DMBP28068 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HLA-DMBP28068 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
HLA-DMBP28068 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
HLA-DMBP28068 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC16.3■□□□□ 0.2
HLA-DMBP28068 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HLA-DMBP28068 AC079089.2-201ENST00000531211 1277 ntBASIC16.3■□□□□ 0.2
HLA-DMBP28068 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HLA-DMBP28068 AL139246.5-201ENST00000606645 996 ntBASIC16.3■□□□□ 0.2
HLA-DMBP28068 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HLA-DMBP28068 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HLA-DMBP28068 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC16.3■□□□□ 0.2
HLA-DMBP28068 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HLA-DMBP28068 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
HLA-DMBP28068 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HLA-DMBP28068 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HLA-DMBP28068 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC16.29■□□□□ 0.2
HLA-DMBP28068 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HLA-DMBP28068 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC16.29■□□□□ 0.2
HLA-DMBP28068 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
HLA-DMBP28068 PALM-208ENST00000592155 2272 ntTSL 4 BASIC16.29■□□□□ 0.2
HLA-DMBP28068 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HLA-DMBP28068 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HLA-DMBP28068 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
HLA-DMBP28068 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HLA-DMBP28068 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HLA-DMBP28068 AC096631.2-201ENST00000436136 790 ntBASIC16.29■□□□□ 0.2
HLA-DMBP28068 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
HLA-DMBP28068 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC16.29■□□□□ 0.2
HLA-DMBP28068 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HLA-DMBP28068 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC16.29■□□□□ 0.2
HLA-DMBP28068 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
HLA-DMBP28068 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HLA-DMBP28068 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HLA-DMBP28068 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DMBP28068 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC16.28■□□□□ 0.2
HLA-DMBP28068 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DMBP28068 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HLA-DMBP28068 GOLGA2P6-201ENST00000340929 2049 ntBASIC16.28■□□□□ 0.2
HLA-DMBP28068 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DMBP28068 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HLA-DMBP28068 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DMBP28068 AF106564.1-201ENST00000607058 2553 ntBASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms