Protein–RNA interactions for Protein: P22362

CCL1, C-C motif chemokine 1, humanhuman

Predictions only

Length 96 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL1P22362 FEM1AP4-201ENST00000443167 1987 ntBASIC18.53■□□□□ 0.56
CCL1P22362 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCL1P22362 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCL1P22362 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCL1P22362 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCL1P22362 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.52■□□□□ 0.56
CCL1P22362 AC005229.4-201ENST00000610085 2198 ntBASIC18.52■□□□□ 0.56
CCL1P22362 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCL1P22362 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCL1P22362 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCL1P22362 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCL1P22362 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC18.52■□□□□ 0.56
CCL1P22362 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCL1P22362 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
CCL1P22362 SNX3-202ENST00000349379 890 ntTSL 2 BASIC18.52■□□□□ 0.56
CCL1P22362 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCL1P22362 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCL1P22362 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC18.52■□□□□ 0.56
CCL1P22362 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC18.52■□□□□ 0.56
CCL1P22362 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCL1P22362 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCL1P22362 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.51■□□□□ 0.55
CCL1P22362 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCL1P22362 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.51■□□□□ 0.55
CCL1P22362 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC18.51■□□□□ 0.55
CCL1P22362 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCL1P22362 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCL1P22362 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCL1P22362 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCL1P22362 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.51■□□□□ 0.55
CCL1P22362 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CCL1P22362 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCL1P22362 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CCL1P22362 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCL1P22362 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCL1P22362 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CCL1P22362 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCL1P22362 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCL1P22362 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCL1P22362 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.49■□□□□ 0.55
CCL1P22362 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCL1P22362 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCL1P22362 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCL1P22362 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
CCL1P22362 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCL1P22362 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC18.49■□□□□ 0.55
CCL1P22362 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC18.49■□□□□ 0.55
CCL1P22362 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCL1P22362 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCL1P22362 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.49■□□□□ 0.55
CCL1P22362 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCL1P22362 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCL1P22362 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCL1P22362 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
CCL1P22362 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.48■□□□□ 0.55
CCL1P22362 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCL1P22362 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCL1P22362 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CCL1P22362 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCL1P22362 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.48■□□□□ 0.55
CCL1P22362 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCL1P22362 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC18.48■□□□□ 0.55
CCL1P22362 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCL1P22362 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC18.48■□□□□ 0.55
CCL1P22362 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC18.48■□□□□ 0.55
CCL1P22362 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCL1P22362 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCL1P22362 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCL1P22362 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CCL1P22362 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCL1P22362 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCL1P22362 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.48■□□□□ 0.55
CCL1P22362 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.48■□□□□ 0.55
CCL1P22362 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
CCL1P22362 AP004607.7-201ENST00000527152 1677 ntBASIC18.47■□□□□ 0.55
CCL1P22362 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC18.47■□□□□ 0.55
CCL1P22362 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CCL1P22362 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCL1P22362 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC18.47■□□□□ 0.55
CCL1P22362 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.47■□□□□ 0.55
CCL1P22362 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.47■□□□□ 0.55
CCL1P22362 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCL1P22362 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.47■□□□□ 0.55
CCL1P22362 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC18.47■□□□□ 0.55
CCL1P22362 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCL1P22362 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCL1P22362 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
CCL1P22362 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCL1P22362 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCL1P22362 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCL1P22362 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCL1P22362 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CCL1P22362 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC18.46■□□□□ 0.55
CCL1P22362 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCL1P22362 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.46■□□□□ 0.55
CCL1P22362 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.46■□□□□ 0.55
CCL1P22362 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCL1P22362 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.46■□□□□ 0.55
CCL1P22362 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC18.46■□□□□ 0.55
CCL1P22362 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms