Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC17.34■□□□□ 0.374e-7■■■□□ 19.1
YBX3P16989 GNAI2-206ENST00000446079 2086 ntTSL 1 (best)16.47■□□□□ 0.234e-7■■■□□ 19.1
YBX3P16989 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC15.83■□□□□ 0.124e-7■■■□□ 19.1
YBX3P16989 GNAI2-210ENST00000490122 2445 ntTSL 215.56■□□□□ 0.084e-7■■■□□ 19.1
YBX3P16989 GNAI2-211ENST00000491100 3886 ntTSL 29.88□□□□□ -0.834e-7■■■□□ 19.1
YBX3P16989 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.441e-7■■■□□ 19.1
YBX3P16989 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.431e-7■■■□□ 19.1
YBX3P16989 AGBL5-209ENST00000487078 3261 ntTSL 1 (best)17.26■□□□□ 0.351e-7■■■□□ 19.1
YBX3P16989 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.923e-10■■■□□ 19.1
YBX3P16989 MGST3-203ENST00000367885 680 ntTSL 2 BASIC20.17■□□□□ 0.823e-10■■■□□ 19.1
YBX3P16989 MGST3-204ENST00000367888 778 ntTSL 3 BASIC16.73■□□□□ 0.273e-10■■■□□ 19.1
YBX3P16989 MGST3-214ENST00000627653 1130 ntTSL 5 BASIC16.65■□□□□ 0.263e-10■■■□□ 19.1
YBX3P16989 MGST3-212ENST00000495447 720 ntTSL 315.34■□□□□ 0.053e-10■■■□□ 19.1
YBX3P16989 MGST3-201ENST00000367883 706 ntTSL 3 BASIC14.5□□□□□ -0.093e-10■■■□□ 19.1
YBX3P16989 MGST3-202ENST00000367884 716 ntAPPRIS P1 TSL 3 BASIC9.81□□□□□ -0.843e-10■■■□□ 19.1
YBX3P16989 MGST3-210ENST00000488688 741 ntTSL 26.81□□□□□ -1.323e-10■■■□□ 19.1
YBX3P16989 MGST3-213ENST00000609263 3101 nt6.16□□□□□ -1.423e-10■■■□□ 19.1
YBX3P16989 MGST3-209ENST00000477450 364 ntTSL 33.16□□□□□ -1.93e-10■■■□□ 19.1
YBX3P16989 EIF4B-214ENST00000553209 380 ntTSL 23.36□□□□□ -1.872e-7■■■□□ 19.1
YBX3P16989 SF1-210ENST00000443908 767 ntTSL 317.32■□□□□ 0.368e-20■■■□□ 19.1
YBX3P16989 SF1-206ENST00000413725 843 ntTSL 216.4■□□□□ 0.228e-20■■■□□ 19.1
YBX3P16989 RPS2-217ENST00000563194 170 ntTSL 53.53□□□□□ -1.847e-62■■■□□ 19.1
YBX3P16989 PEX19-208ENST00000532508 1237 ntTSL 517.91■□□□□ 0.465e-10■■■□□ 19
YBX3P16989 PEX19-206ENST00000495624 734 ntTSL 316.5■□□□□ 0.235e-10■■■□□ 19
YBX3P16989 AL139011.2-201ENST00000556710 2635 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.175e-10■■■□□ 19
YBX3P16989 AL139011.2-202ENST00000485079 914 ntTSL 312.48□□□□□ -0.415e-10■■■□□ 19
YBX3P16989 PEX19-204ENST00000467711 205 ntTSL 310.15□□□□□ -0.785e-10■■■□□ 19
YBX3P16989 PEX19-205ENST00000472750 3504 ntTSL 1 (best)9.08□□□□□ -0.965e-10■■■□□ 19
YBX3P16989 PEX19-201ENST00000368072 3661 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.175e-10■■■□□ 19
YBX3P16989 HDLBP-207ENST00000420451 559 ntTSL 414.74□□□□□ -0.058e-12■■■□□ 19
YBX3P16989 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC5.68□□□□□ -1.53e-6■■■□□ 19
YBX3P16989 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.693e-6■■■□□ 19
YBX3P16989 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.913e-6■■■□□ 19
YBX3P16989 NAA10-210ENST00000467451 743 ntTSL 225.07■■□□□ 1.63e-7■■■□□ 19
YBX3P16989 NAA10-215ENST00000484950 873 ntTSL 218.1■□□□□ 0.493e-7■■■□□ 19
YBX3P16989 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.146e-7■■■□□ 19
YBX3P16989 PTPN23-206ENST00000602307 5119 ntTSL 212.39□□□□□ -0.436e-7■■■□□ 19
YBX3P16989 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.122e-8■■■□□ 19
YBX3P16989 MRPL15-202ENST00000519831 601 ntTSL 213.31□□□□□ -0.282e-17■■■□□ 19
YBX3P16989 NCSTN-204ENST00000424645 958 ntTSL 512.71□□□□□ -0.373e-7■■■□□ 19
YBX3P16989 NCSTN-209ENST00000459963 1246 ntTSL 512.69□□□□□ -0.383e-7■■■□□ 19
YBX3P16989 TBC1D20-203ENST00000461304 2024 ntTSL 1 (best)25.78■■□□□ 1.724e-7■■■□□ 19
YBX3P16989 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.484e-7■■■□□ 19
YBX3P16989 TBC1D20-204ENST00000494633 3820 ntTSL 213.93□□□□□ -0.184e-7■■■□□ 19
YBX3P16989 NOL11-201ENST00000253247 2947 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.862e-7■■■□□ 19
YBX3P16989 NOL11-206ENST00000581375 2448 ntTSL 28.48□□□□□ -1.052e-7■■■□□ 19
YBX3P16989 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.715e-7■■■□□ 19
YBX3P16989 NT5C3B-214ENST00000520442 331 ntTSL 38.32□□□□□ -1.081e-10■■■□□ 19
YBX3P16989 RPS4XP3-201ENST00000398541 413 ntBASIC4.03□□□□□ -1.762e-10■■■□□ 19
YBX3P16989 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC21.25■□□□□ 0.993e-12■■■□□ 19
YBX3P16989 CAPNS1-213ENST00000592354 690 ntTSL 218.37■□□□□ 0.537e-7■■■□□ 19
YBX3P16989 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.049e-7■■■□□ 19
YBX3P16989 PIK3CG-205ENST00000496166 5197 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.169e-7■■■□□ 19
YBX3P16989 XPOT-203ENST00000538086 787 ntTSL 55.61□□□□□ -1.514e-8■■■□□ 19
YBX3P16989 ARID1A-206ENST00000466382 2699 ntTSL 213.58□□□□□ -0.233e-8■■■□□ 19
YBX3P16989 RNF138-208ENST00000583733 587 ntTSL 222.69■■□□□ 1.225e-18■■■□□ 18.9
YBX3P16989 RNF138-206ENST00000580499 503 ntTSL 220.24■□□□□ 0.835e-18■■■□□ 18.9
YBX3P16989 RNF138-204ENST00000578107 493 ntTSL 218.63■□□□□ 0.575e-18■■■□□ 18.9
YBX3P16989 NUSAP1-201ENST00000260359 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.544e-7■■■□□ 18.9
YBX3P16989 NUSAP1-205ENST00000558123 1934 ntTSL 510.01□□□□□ -0.814e-7■■■□□ 18.9
YBX3P16989 NUSAP1-212ENST00000560747 2256 ntAPPRIS ALT2 TSL 1 (best) BASIC9.85□□□□□ -0.834e-7■■■□□ 18.9
YBX3P16989 NUSAP1-210ENST00000560177 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -14e-7■■■□□ 18.9
YBX3P16989 NUSAP1-202ENST00000414849 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.14e-7■■■□□ 18.9
YBX3P16989 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC24.53■■□□□ 1.525e-11■■■□□ 18.9
YBX3P16989 SLC6A6-206ENST00000615188 689 ntTSL 322.97■■□□□ 1.275e-11■■■□□ 18.9
YBX3P16989 SLC6A6-203ENST00000610642 1983 ntTSL 222.37■■□□□ 1.175e-11■■■□□ 18.9
YBX3P16989 SLC6A6-209ENST00000622176 1116 ntTSL 1 (best)21.86■■□□□ 1.095e-11■■■□□ 18.9
YBX3P16989 PPP1R42-202ENST00000517834 610 ntTSL 46.87□□□□□ -1.312e-10■■■□□ 18.9
YBX3P16989 COPS5-212ENST00000523086 717 ntTSL 26.01□□□□□ -1.452e-10■■■□□ 18.9
YBX3P16989 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.761e-7■■■□□ 18.9
YBX3P16989 METTL5-209ENST00000471560 550 ntTSL 222.5■■□□□ 1.193e-16■■■□□ 18.9
YBX3P16989 NANS-206ENST00000495319 764 ntTSL 323.33■■□□□ 1.339e-7■■■□□ 18.9
YBX3P16989 ICMT-202ENST00000474756 1227 ntTSL 231.77■■■□□ 2.681e-6■■■□□ 18.9
YBX3P16989 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC39.65■■■■□ 3.944e-8■■■□□ 18.9
YBX3P16989 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC29■■■□□ 2.234e-8■■■□□ 18.9
YBX3P16989 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.124e-8■■■□□ 18.9
YBX3P16989 TSPAN3-208ENST00000560514 638 ntTSL 225.27■■□□□ 1.642e-12■■■□□ 18.9
YBX3P16989 TSPAN3-204ENST00000558394 550 ntTSL 425.27■■□□□ 1.642e-12■■■□□ 18.9
YBX3P16989 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.94■□□□□ 0.784e-7■■■□□ 18.9
YBX3P16989 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.64e-7■■■□□ 18.9
YBX3P16989 COPS3-215ENST00000578317 1625 ntTSL 29.64□□□□□ -0.874e-7■■■□□ 18.9
YBX3P16989 COPS3-203ENST00000439936 1394 ntTSL 5 BASIC9.5□□□□□ -0.894e-7■■■□□ 18.9
YBX3P16989 AL365357.1-201ENST00000455621 357 ntBASIC15.19■□□□□ 0.022e-6■■■□□ 18.9
YBX3P16989 RASAL2-201ENST00000367649 4378 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.252e-6■■■□□ 18.9
YBX3P16989 PDLIM1-204ENST00000492511 453 ntTSL 29.4□□□□□ -0.91e-6■■■□□ 18.9
YBX3P16989 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.422e-6■■■□□ 18.9
YBX3P16989 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.672e-6■■■□□ 18.9
YBX3P16989 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.762e-6■■■□□ 18.9
YBX3P16989 RBM10-206ENST00000628161 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.054e-7■■■□□ 18.9
YBX3P16989 RBM10-202ENST00000345781 3108 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.224e-7■■■□□ 18.9
YBX3P16989 DYNLT1-203ENST00000367089 726 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.249e-9■■■□□ 18.9
YBX3P16989 RBM10-201ENST00000329236 3201 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.314e-7■■■□□ 18.9
YBX3P16989 RBM10-203ENST00000377604 3747 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.54e-7■■■□□ 18.9
YBX3P16989 DYNLT1-202ENST00000367088 2891 ntTSL 2 BASIC9.62□□□□□ -0.879e-9■■■□□ 18.9
YBX3P16989 MS4A3-204ENST00000525686 746 ntTSL 315.26■□□□□ 0.032e-9■■■□□ 18.9
YBX3P16989 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC9.87□□□□□ -0.832e-9■■■□□ 18.9
YBX3P16989 MS4A3-203ENST00000395032 867 ntTSL 2 BASIC9.01□□□□□ -0.972e-9■■■□□ 18.9
YBX3P16989 NLE1-206ENST00000589367 1017 ntTSL 526.63■■□□□ 1.851e-8■■■□□ 18.9
YBX3P16989 NLE1-207ENST00000593176 800 ntTSL 321.45■■□□□ 1.021e-8■■■□□ 18.9
YBX3P16989 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC21.28■■□□□ 11e-8■■■□□ 18.9
Retrieved 100 of 29,075 protein–RNA pairs in 488.8 ms