Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VIMP08670 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VIMP08670 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VIMP08670 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VIMP08670 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
VIMP08670 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.5■■□□□ 1.03
VIMP08670 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VIMP08670 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21.5■■□□□ 1.03
VIMP08670 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VIMP08670 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VIMP08670 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
VIMP08670 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VIMP08670 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.49■■□□□ 1.03
VIMP08670 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VIMP08670 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VIMP08670 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.49■■□□□ 1.03
VIMP08670 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.49■■□□□ 1.03
VIMP08670 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC21.49■■□□□ 1.03
VIMP08670 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.49■■□□□ 1.03
VIMP08670 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VIMP08670 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VIMP08670 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VIMP08670 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.49■■□□□ 1.03
VIMP08670 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
VIMP08670 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
VIMP08670 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
VIMP08670 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
VIMP08670 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.48■■□□□ 1.03
VIMP08670 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
VIMP08670 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
VIMP08670 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VIMP08670 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VIMP08670 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
VIMP08670 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VIMP08670 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.48■■□□□ 1.03
VIMP08670 CA15P2-201ENST00000611168 834 ntBASIC21.48■■□□□ 1.03
VIMP08670 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.48■■□□□ 1.03
VIMP08670 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VIMP08670 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VIMP08670 RNF126P1-201ENST00000567452 1320 ntBASIC21.48■■□□□ 1.03
VIMP08670 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.48■■□□□ 1.03
VIMP08670 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
VIMP08670 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
VIMP08670 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
VIMP08670 AC022616.5-201ENST00000518796 181 ntBASIC21.47■■□□□ 1.03
VIMP08670 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
VIMP08670 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VIMP08670 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VIMP08670 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VIMP08670 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
VIMP08670 FEM1AP1-201ENST00000431297 1995 ntBASIC21.47■■□□□ 1.03
VIMP08670 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
VIMP08670 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VIMP08670 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.46■■□□□ 1.03
VIMP08670 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VIMP08670 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VIMP08670 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
VIMP08670 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
VIMP08670 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
VIMP08670 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.46■■□□□ 1.03
VIMP08670 AC009086.3-201ENST00000623486 1008 ntBASIC21.46■■□□□ 1.03
VIMP08670 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VIMP08670 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VIMP08670 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
VIMP08670 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.46■■□□□ 1.03
VIMP08670 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
VIMP08670 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
VIMP08670 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
VIMP08670 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VIMP08670 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VIMP08670 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC21.45■■□□□ 1.02
VIMP08670 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
VIMP08670 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
VIMP08670 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VIMP08670 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.45■■□□□ 1.02
VIMP08670 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.45■■□□□ 1.02
VIMP08670 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.45■■□□□ 1.02
VIMP08670 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
VIMP08670 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VIMP08670 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
VIMP08670 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
VIMP08670 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC21.44■■□□□ 1.02
VIMP08670 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.44■■□□□ 1.02
VIMP08670 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VIMP08670 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.44■■□□□ 1.02
VIMP08670 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VIMP08670 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VIMP08670 FP325331.1-202ENST00000623531 1380 ntBASIC21.44■■□□□ 1.02
VIMP08670 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.44■■□□□ 1.02
VIMP08670 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VIMP08670 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VIMP08670 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
VIMP08670 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VIMP08670 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VIMP08670 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
VIMP08670 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
VIMP08670 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VIMP08670 AC120024.1-201ENST00000562672 995 ntBASIC21.43■■□□□ 1.02
VIMP08670 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.43■■□□□ 1.02
VIMP08670 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms