Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC13.61□□□□□ -0.23
APOBP04114 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
APOBP04114 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
APOBP04114 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
APOBP04114 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
APOBP04114 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
APOBP04114 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC13.6□□□□□ -0.23
APOBP04114 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
APOBP04114 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
APOBP04114 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
APOBP04114 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
APOBP04114 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
APOBP04114 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
APOBP04114 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
APOBP04114 RNF121-214ENST00000533380 870 ntTSL 3 BASIC13.6□□□□□ -0.23
APOBP04114 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC13.6□□□□□ -0.23
APOBP04114 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
APOBP04114 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC13.6□□□□□ -0.23
APOBP04114 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
APOBP04114 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
APOBP04114 AC008694.1-202ENST00000636953 945 ntBASIC13.6□□□□□ -0.23
APOBP04114 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC13.6□□□□□ -0.23
APOBP04114 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
APOBP04114 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
APOBP04114 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
APOBP04114 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC13.59□□□□□ -0.23
APOBP04114 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
APOBP04114 AC145676.1-201ENST00000514988 2004 ntBASIC13.59□□□□□ -0.23
APOBP04114 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC13.59□□□□□ -0.23
APOBP04114 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC13.59□□□□□ -0.23
APOBP04114 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC13.59□□□□□ -0.23
APOBP04114 BX088651.1-201ENST00000540551 451 ntBASIC13.59□□□□□ -0.23
APOBP04114 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
APOBP04114 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
APOBP04114 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
APOBP04114 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC13.59□□□□□ -0.23
APOBP04114 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC13.59□□□□□ -0.23
APOBP04114 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
APOBP04114 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
APOBP04114 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
APOBP04114 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
APOBP04114 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
APOBP04114 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.23
APOBP04114 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC13.58□□□□□ -0.23
APOBP04114 OR10C1-204ENST00000622521 1039 ntBASIC13.58□□□□□ -0.23
APOBP04114 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
APOBP04114 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
APOBP04114 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
APOBP04114 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC13.58□□□□□ -0.24
APOBP04114 UNC93B5-201ENST00000530315 699 ntBASIC13.58□□□□□ -0.24
APOBP04114 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC13.58□□□□□ -0.24
APOBP04114 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC13.58□□□□□ -0.24
APOBP04114 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC13.58□□□□□ -0.24
APOBP04114 AC138932.3-201ENST00000567634 1902 ntBASIC13.58□□□□□ -0.24
APOBP04114 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC13.58□□□□□ -0.24
APOBP04114 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
APOBP04114 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
APOBP04114 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
APOBP04114 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
APOBP04114 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
APOBP04114 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC13.58□□□□□ -0.24
APOBP04114 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC13.58□□□□□ -0.24
APOBP04114 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
APOBP04114 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
APOBP04114 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC13.57□□□□□ -0.24
APOBP04114 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
APOBP04114 RPS2P4-201ENST00000476944 856 ntBASIC13.57□□□□□ -0.24
APOBP04114 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC13.57□□□□□ -0.24
APOBP04114 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC13.57□□□□□ -0.24
APOBP04114 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC13.57□□□□□ -0.24
APOBP04114 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
APOBP04114 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
APOBP04114 RCN1P1-201ENST00000400413 996 ntBASIC13.57□□□□□ -0.24
APOBP04114 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC13.57□□□□□ -0.24
APOBP04114 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
APOBP04114 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
APOBP04114 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
APOBP04114 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
APOBP04114 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC13.57□□□□□ -0.24
APOBP04114 BAALC-201ENST00000297574 801 ntTSL 3 BASIC13.57□□□□□ -0.24
APOBP04114 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
APOBP04114 AC008403.3-201ENST00000598924 454 ntBASIC13.57□□□□□ -0.24
APOBP04114 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
APOBP04114 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
APOBP04114 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
APOBP04114 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
APOBP04114 IRX5-204ENST00000560154 879 ntTSL 5 BASIC13.56□□□□□ -0.24
APOBP04114 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
APOBP04114 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
APOBP04114 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
APOBP04114 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC13.56□□□□□ -0.24
APOBP04114 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC13.56□□□□□ -0.24
APOBP04114 AC010331.1-201ENST00000611423 582 ntBASIC13.56□□□□□ -0.24
APOBP04114 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
APOBP04114 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
APOBP04114 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
APOBP04114 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC13.56□□□□□ -0.24
APOBP04114 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC13.56□□□□□ -0.24
APOBP04114 GAS7-202ENST00000396115 929 ntTSL 5 BASIC13.56□□□□□ -0.24
APOBP04114 BX276092.2-201ENST00000417668 665 ntBASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms