Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4O95639 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4O95639 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.41■□□□□ 0.86
CPSF4O95639 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CPSF4O95639 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CPSF4O95639 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CPSF4O95639 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
CPSF4O95639 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CPSF4O95639 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CPSF4O95639 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CPSF4O95639 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CPSF4O95639 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.4■□□□□ 0.86
CPSF4O95639 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CPSF4O95639 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.4■□□□□ 0.86
CPSF4O95639 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CPSF4O95639 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.4■□□□□ 0.86
CPSF4O95639 OR7E47P-201ENST00000546390 1422 ntBASIC20.4■□□□□ 0.86
CPSF4O95639 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.4■□□□□ 0.86
CPSF4O95639 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CPSF4O95639 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CPSF4O95639 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.4■□□□□ 0.86
CPSF4O95639 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.4■□□□□ 0.86
CPSF4O95639 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
CPSF4O95639 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CPSF4O95639 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CPSF4O95639 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CPSF4O95639 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.39■□□□□ 0.85
CPSF4O95639 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CPSF4O95639 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CPSF4O95639 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.39■□□□□ 0.85
CPSF4O95639 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
CPSF4O95639 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CPSF4O95639 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CPSF4O95639 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.39■□□□□ 0.85
CPSF4O95639 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CPSF4O95639 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
CPSF4O95639 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4O95639 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4O95639 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
CPSF4O95639 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4O95639 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.38■□□□□ 0.85
CPSF4O95639 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4O95639 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4O95639 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.38■□□□□ 0.85
CPSF4O95639 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.38■□□□□ 0.85
CPSF4O95639 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4O95639 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4O95639 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4O95639 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4O95639 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4O95639 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4O95639 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4O95639 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CPSF4O95639 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.37■□□□□ 0.85
CPSF4O95639 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.37■□□□□ 0.85
CPSF4O95639 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CPSF4O95639 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CPSF4O95639 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CPSF4O95639 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CPSF4O95639 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
CPSF4O95639 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CPSF4O95639 AL512631.2-201ENST00000604634 923 ntBASIC20.37■□□□□ 0.85
CPSF4O95639 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
CPSF4O95639 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CPSF4O95639 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.37■□□□□ 0.85
CPSF4O95639 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CPSF4O95639 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CPSF4O95639 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CPSF4O95639 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CPSF4O95639 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
CPSF4O95639 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CPSF4O95639 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.36■□□□□ 0.85
CPSF4O95639 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.36■□□□□ 0.85
CPSF4O95639 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CPSF4O95639 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CPSF4O95639 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.36■□□□□ 0.85
CPSF4O95639 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.36■□□□□ 0.85
CPSF4O95639 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CPSF4O95639 AC010525.1-201ENST00000585559 441 ntBASIC20.36■□□□□ 0.85
CPSF4O95639 AC092171.4-201ENST00000609130 632 ntBASIC20.36■□□□□ 0.85
CPSF4O95639 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CPSF4O95639 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CPSF4O95639 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CPSF4O95639 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CPSF4O95639 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
CPSF4O95639 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CPSF4O95639 AC026471.6-201ENST00000622954 1905 ntBASIC20.35■□□□□ 0.85
CPSF4O95639 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
CPSF4O95639 AC005229.4-201ENST00000610085 2198 ntBASIC20.35■□□□□ 0.85
CPSF4O95639 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CPSF4O95639 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CPSF4O95639 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.35■□□□□ 0.85
CPSF4O95639 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
CPSF4O95639 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CPSF4O95639 OR2I1P-207ENST00000453522 948 ntBASIC20.35■□□□□ 0.85
CPSF4O95639 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.35■□□□□ 0.85
CPSF4O95639 AC087239.1-201ENST00000622671 572 ntBASIC20.35■□□□□ 0.85
CPSF4O95639 AC068587.7-201ENST00000641602 218 ntBASIC20.35■□□□□ 0.85
CPSF4O95639 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CPSF4O95639 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms