Protein–RNA interactions for Protein: O60716

CTNND1, Catenin delta-1, humanhuman

Known RBP Predictions only

Length 968 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1O60716 AC010536.3-201ENST00000620306 533 ntBASIC25.23■■□□□ 1.63
CTNND1O60716 TMEM191A-211ENST00000637163 1067 ntBASIC25.23■■□□□ 1.63
CTNND1O60716 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
CTNND1O60716 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
CTNND1O60716 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC25.23■■□□□ 1.63
CTNND1O60716 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
CTNND1O60716 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CTNND1O60716 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC25.22■■□□□ 1.63
CTNND1O60716 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CTNND1O60716 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
CTNND1O60716 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC25.22■■□□□ 1.63
CTNND1O60716 LINC00526-201ENST00000581067 1875 ntBASIC25.22■■□□□ 1.63
CTNND1O60716 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC25.22■■□□□ 1.63
CTNND1O60716 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC25.22■■□□□ 1.63
CTNND1O60716 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CTNND1O60716 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC25.22■■□□□ 1.63
CTNND1O60716 SLC29A4P1-201ENST00000398760 971 ntBASIC25.22■■□□□ 1.63
CTNND1O60716 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC25.22■■□□□ 1.63
CTNND1O60716 AL138781.1-201ENST00000566567 1274 ntBASIC25.22■■□□□ 1.63
CTNND1O60716 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC25.22■■□□□ 1.63
CTNND1O60716 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
CTNND1O60716 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC25.21■■□□□ 1.63
CTNND1O60716 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
CTNND1O60716 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CTNND1O60716 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC25.21■■□□□ 1.63
CTNND1O60716 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC25.21■■□□□ 1.63
CTNND1O60716 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC25.21■■□□□ 1.63
CTNND1O60716 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC25.21■■□□□ 1.63
CTNND1O60716 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC25.21■■□□□ 1.63
CTNND1O60716 SLC7A5P1-201ENST00000568957 537 ntBASIC25.21■■□□□ 1.63
CTNND1O60716 AC133552.2-202ENST00000575694 574 ntBASIC25.21■■□□□ 1.63
CTNND1O60716 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC25.21■■□□□ 1.63
CTNND1O60716 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
CTNND1O60716 THRA-202ENST00000394121 2260 ntTSL 2 BASIC25.21■■□□□ 1.63
CTNND1O60716 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
CTNND1O60716 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CTNND1O60716 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CTNND1O60716 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
CTNND1O60716 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
CTNND1O60716 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
CTNND1O60716 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.62
CTNND1O60716 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC25.2■■□□□ 1.62
CTNND1O60716 AF201337.1-201ENST00000520239 748 ntBASIC25.2■■□□□ 1.62
CTNND1O60716 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC25.2■■□□□ 1.62
CTNND1O60716 KRT18P6-201ENST00000555540 1265 ntBASIC25.2■■□□□ 1.62
CTNND1O60716 PFKL-212ENST00000628044 129 ntTSL 3 BASIC25.2■■□□□ 1.62
CTNND1O60716 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
CTNND1O60716 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
CTNND1O60716 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
CTNND1O60716 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
CTNND1O60716 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC25.19■■□□□ 1.62
CTNND1O60716 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
CTNND1O60716 KLF13-207ENST00000560473 489 ntTSL 3 BASIC25.19■■□□□ 1.62
CTNND1O60716 EEF1DP3-203ENST00000566025 782 ntBASIC25.19■■□□□ 1.62
CTNND1O60716 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CTNND1O60716 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC25.19■■□□□ 1.62
CTNND1O60716 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC25.19■■□□□ 1.62
CTNND1O60716 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
CTNND1O60716 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
CTNND1O60716 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
CTNND1O60716 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC25.18■■□□□ 1.62
CTNND1O60716 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
CTNND1O60716 APTR-203ENST00000430801 583 ntTSL 5 BASIC25.18■■□□□ 1.62
CTNND1O60716 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC25.18■■□□□ 1.62
CTNND1O60716 RGMA-211ENST00000557420 989 ntTSL 3 BASIC25.18■■□□□ 1.62
CTNND1O60716 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC25.18■■□□□ 1.62
CTNND1O60716 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CTNND1O60716 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
CTNND1O60716 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CTNND1O60716 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC25.17■■□□□ 1.62
CTNND1O60716 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
CTNND1O60716 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CTNND1O60716 AC053503.5-201ENST00000601508 636 ntBASIC25.17■■□□□ 1.62
CTNND1O60716 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC25.17■■□□□ 1.62
CTNND1O60716 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CTNND1O60716 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
CTNND1O60716 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CTNND1O60716 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CTNND1O60716 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CTNND1O60716 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CTNND1O60716 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC25.16■■□□□ 1.62
CTNND1O60716 AC073210.2-201ENST00000430369 194 ntBASIC25.16■■□□□ 1.62
CTNND1O60716 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CTNND1O60716 AC105036.2-201ENST00000569468 176 ntBASIC25.16■■□□□ 1.62
CTNND1O60716 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CTNND1O60716 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC25.16■■□□□ 1.62
CTNND1O60716 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC25.16■■□□□ 1.62
CTNND1O60716 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CTNND1O60716 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
CTNND1O60716 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CTNND1O60716 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC25.15■■□□□ 1.62
CTNND1O60716 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC25.15■■□□□ 1.62
CTNND1O60716 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
CTNND1O60716 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
CTNND1O60716 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC25.15■■□□□ 1.62
CTNND1O60716 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
CTNND1O60716 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
CTNND1O60716 AC069152.1-201ENST00000438030 544 ntBASIC25.15■■□□□ 1.62
CTNND1O60716 TSPY20P-201ENST00000450910 630 ntBASIC25.15■■□□□ 1.62
CTNND1O60716 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC25.15■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms