Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
HMGB3O15347 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB3O15347 SRP68-213ENST00000629930 165 ntTSL 5 BASIC17.29■□□□□ 0.36
HMGB3O15347 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB3O15347 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB3O15347 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB3O15347 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB3O15347 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGB3O15347 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB3O15347 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC17.29■□□□□ 0.36
HMGB3O15347 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB3O15347 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB3O15347 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB3O15347 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGB3O15347 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB3O15347 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB3O15347 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB3O15347 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGB3O15347 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HMGB3O15347 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGB3O15347 AC018755.3-202ENST00000596210 929 ntBASIC17.28■□□□□ 0.36
HMGB3O15347 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB3O15347 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB3O15347 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB3O15347 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HMGB3O15347 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB3O15347 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB3O15347 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB3O15347 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
HMGB3O15347 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
HMGB3O15347 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB3O15347 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB3O15347 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB3O15347 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
HMGB3O15347 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB3O15347 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB3O15347 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGB3O15347 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB3O15347 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB3O15347 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB3O15347 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB3O15347 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB3O15347 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB3O15347 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB3O15347 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
HMGB3O15347 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
HMGB3O15347 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
HMGB3O15347 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB3O15347 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HMGB3O15347 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
HMGB3O15347 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB3O15347 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB3O15347 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB3O15347 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
HMGB3O15347 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB3O15347 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
HMGB3O15347 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB3O15347 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB3O15347 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB3O15347 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC17.25■□□□□ 0.35
HMGB3O15347 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB3O15347 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGB3O15347 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB3O15347 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGB3O15347 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGB3O15347 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGB3O15347 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
HMGB3O15347 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB3O15347 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
HMGB3O15347 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
HMGB3O15347 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
HMGB3O15347 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB3O15347 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
HMGB3O15347 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
HMGB3O15347 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB3O15347 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
HMGB3O15347 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB3O15347 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB3O15347 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
HMGB3O15347 SPCS2P3-201ENST00000500401 656 ntBASIC17.24■□□□□ 0.35
HMGB3O15347 AC087393.1-201ENST00000582896 145 ntBASIC17.24■□□□□ 0.35
HMGB3O15347 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC17.24■□□□□ 0.35
HMGB3O15347 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB3O15347 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB3O15347 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB3O15347 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB3O15347 AL157384.1-201ENST00000445995 2473 ntBASIC17.24■□□□□ 0.35
HMGB3O15347 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB3O15347 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB3O15347 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB3O15347 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB3O15347 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB3O15347 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB3O15347 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HMGB3O15347 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
HMGB3O15347 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB3O15347 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB3O15347 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB3O15347 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB3O15347 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms