Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 OR2I1P-207ENST00000453522 948 ntBASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC17.27■□□□□ 0.36
TRAV3A0A0B4J244 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC17.27■□□□□ 0.36
TRAV3A0A0B4J244 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV3A0A0B4J244 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
TRAV3A0A0B4J244 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV3A0A0B4J244 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV3A0A0B4J244 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
TRAV3A0A0B4J244 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV3A0A0B4J244 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC17.27■□□□□ 0.36
TRAV3A0A0B4J244 SRR-208ENST00000576848 588 ntTSL 4 BASIC17.27■□□□□ 0.36
TRAV3A0A0B4J244 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC17.27■□□□□ 0.36
TRAV3A0A0B4J244 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
TRAV3A0A0B4J244 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
TRAV3A0A0B4J244 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRAV3A0A0B4J244 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC17.27■□□□□ 0.35
TRAV3A0A0B4J244 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV3A0A0B4J244 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV3A0A0B4J244 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV3A0A0B4J244 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV3A0A0B4J244 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV3A0A0B4J244 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV3A0A0B4J244 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV3A0A0B4J244 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV3A0A0B4J244 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC17.26■□□□□ 0.35
TRAV3A0A0B4J244 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV3A0A0B4J244 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV3A0A0B4J244 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV3A0A0B4J244 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 PTCHD3P2-201ENST00000424937 1205 ntBASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 AL356441.2-201ENST00000443009 864 ntBASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
TRAV3A0A0B4J244 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV3A0A0B4J244 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV3A0A0B4J244 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAV3A0A0B4J244 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
TRAV3A0A0B4J244 SERBP1P1-201ENST00000396021 1160 ntBASIC17.24■□□□□ 0.35
TRAV3A0A0B4J244 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV3A0A0B4J244 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV3A0A0B4J244 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TRAV3A0A0B4J244 MIR4466-201ENST00000606121 54 ntBASIC17.24■□□□□ 0.35
TRAV3A0A0B4J244 AC068587.7-201ENST00000641602 218 ntBASIC17.24■□□□□ 0.35
TRAV3A0A0B4J244 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC17.24■□□□□ 0.35
TRAV3A0A0B4J244 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV3A0A0B4J244 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC17.24■□□□□ 0.35
TRAV3A0A0B4J244 FEM1AP4-201ENST00000443167 1987 ntBASIC17.24■□□□□ 0.35
TRAV3A0A0B4J244 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV3A0A0B4J244 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV3A0A0B4J244 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
TRAV3A0A0B4J244 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
TRAV3A0A0B4J244 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAV3A0A0B4J244 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV3A0A0B4J244 AC010141.3-201ENST00000456659 717 ntBASIC17.23■□□□□ 0.35
TRAV3A0A0B4J244 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC17.23■□□□□ 0.35
TRAV3A0A0B4J244 TRIR-202ENST00000588213 841 ntTSL 3 BASIC17.23■□□□□ 0.35
TRAV3A0A0B4J244 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV3A0A0B4J244 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV3A0A0B4J244 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
TRAV3A0A0B4J244 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC17.23■□□□□ 0.35
TRAV3A0A0B4J244 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV3A0A0B4J244 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV3A0A0B4J244 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC17.23■□□□□ 0.35
TRAV3A0A0B4J244 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
TRAV3A0A0B4J244 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC17.22■□□□□ 0.35
TRAV3A0A0B4J244 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC17.22■□□□□ 0.35
TRAV3A0A0B4J244 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV3A0A0B4J244 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV3A0A0B4J244 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV3A0A0B4J244 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV3A0A0B4J244 HES6-206ENST00000409574 738 ntTSL 2 BASIC17.22■□□□□ 0.35
TRAV3A0A0B4J244 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms