Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHGA1Q9Y5H4 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.78■□□□□ 0.92
PCDHGA1Q9Y5H4 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHGA1Q9Y5H4 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHGA1Q9Y5H4 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.78■□□□□ 0.92
PCDHGA1Q9Y5H4 AC093827.2-201ENST00000512654 315 ntBASIC20.78■□□□□ 0.92
PCDHGA1Q9Y5H4 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHGA1Q9Y5H4 ITM2C-210ENST00000620962 501 ntBASIC20.78■□□□□ 0.92
PCDHGA1Q9Y5H4 AC013268.1-206ENST00000638368 961 ntBASIC20.78■□□□□ 0.92
PCDHGA1Q9Y5H4 AC112229.1-201ENST00000639295 961 ntBASIC20.78■□□□□ 0.92
PCDHGA1Q9Y5H4 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHGA1Q9Y5H4 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
PCDHGA1Q9Y5H4 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHGA1Q9Y5H4 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHGA1Q9Y5H4 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHGA1Q9Y5H4 LINC00543-201ENST00000567234 1845 ntBASIC20.77■□□□□ 0.92
PCDHGA1Q9Y5H4 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHGA1Q9Y5H4 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.77■□□□□ 0.92
PCDHGA1Q9Y5H4 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.77■□□□□ 0.92
PCDHGA1Q9Y5H4 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHGA1Q9Y5H4 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.77■□□□□ 0.92
PCDHGA1Q9Y5H4 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.77■□□□□ 0.92
PCDHGA1Q9Y5H4 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHGA1Q9Y5H4 AC008687.6-201ENST00000596318 630 ntBASIC20.77■□□□□ 0.92
PCDHGA1Q9Y5H4 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHGA1Q9Y5H4 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PCDHGA1Q9Y5H4 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDHGA1Q9Y5H4 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.76■□□□□ 0.91
PCDHGA1Q9Y5H4 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PCDHGA1Q9Y5H4 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.76■□□□□ 0.91
PCDHGA1Q9Y5H4 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PCDHGA1Q9Y5H4 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
PCDHGA1Q9Y5H4 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
PCDHGA1Q9Y5H4 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDHGA1Q9Y5H4 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDHGA1Q9Y5H4 AL139125.2-201ENST00000623134 1869 ntBASIC20.75■□□□□ 0.91
PCDHGA1Q9Y5H4 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.75■□□□□ 0.91
PCDHGA1Q9Y5H4 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDHGA1Q9Y5H4 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.75■□□□□ 0.91
PCDHGA1Q9Y5H4 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.75■□□□□ 0.91
PCDHGA1Q9Y5H4 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDHGA1Q9Y5H4 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.75■□□□□ 0.91
PCDHGA1Q9Y5H4 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
PCDHGA1Q9Y5H4 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.75■□□□□ 0.91
PCDHGA1Q9Y5H4 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PCDHGA1Q9Y5H4 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.74■□□□□ 0.91
PCDHGA1Q9Y5H4 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCDHGA1Q9Y5H4 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
PCDHGA1Q9Y5H4 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.74■□□□□ 0.91
PCDHGA1Q9Y5H4 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
PCDHGA1Q9Y5H4 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.74■□□□□ 0.91
PCDHGA1Q9Y5H4 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
PCDHGA1Q9Y5H4 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.74■□□□□ 0.91
PCDHGA1Q9Y5H4 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCDHGA1Q9Y5H4 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
PCDHGA1Q9Y5H4 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHGA1Q9Y5H4 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHGA1Q9Y5H4 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHGA1Q9Y5H4 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHGA1Q9Y5H4 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.73■□□□□ 0.91
PCDHGA1Q9Y5H4 KRT18P29-201ENST00000397031 1267 ntBASIC20.73■□□□□ 0.91
PCDHGA1Q9Y5H4 TERF1P5-201ENST00000477545 1207 ntBASIC20.73■□□□□ 0.91
PCDHGA1Q9Y5H4 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHGA1Q9Y5H4 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.73■□□□□ 0.91
PCDHGA1Q9Y5H4 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHGA1Q9Y5H4 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.73■□□□□ 0.91
PCDHGA1Q9Y5H4 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.73■□□□□ 0.91
PCDHGA1Q9Y5H4 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDHGA1Q9Y5H4 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDHGA1Q9Y5H4 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.72■□□□□ 0.91
PCDHGA1Q9Y5H4 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.72■□□□□ 0.91
PCDHGA1Q9Y5H4 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PCDHGA1Q9Y5H4 AC007322.4-201ENST00000509611 723 ntBASIC20.72■□□□□ 0.91
PCDHGA1Q9Y5H4 AC098934.4-201ENST00000564127 592 ntBASIC20.72■□□□□ 0.91
PCDHGA1Q9Y5H4 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.72■□□□□ 0.91
PCDHGA1Q9Y5H4 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.72■□□□□ 0.91
PCDHGA1Q9Y5H4 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.72■□□□□ 0.91
PCDHGA1Q9Y5H4 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PCDHGA1Q9Y5H4 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
PCDHGA1Q9Y5H4 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDHGA1Q9Y5H4 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.72■□□□□ 0.91
PCDHGA1Q9Y5H4 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDHGA1Q9Y5H4 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.72■□□□□ 0.91
PCDHGA1Q9Y5H4 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.71■□□□□ 0.91
PCDHGA1Q9Y5H4 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHGA1Q9Y5H4 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHGA1Q9Y5H4 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
PCDHGA1Q9Y5H4 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHGA1Q9Y5H4 MIPEPP3-201ENST00000412105 444 ntBASIC20.71■□□□□ 0.91
PCDHGA1Q9Y5H4 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.71■□□□□ 0.91
PCDHGA1Q9Y5H4 OR10C1-204ENST00000622521 1039 ntBASIC20.71■□□□□ 0.91
PCDHGA1Q9Y5H4 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHGA1Q9Y5H4 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHGA1Q9Y5H4 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHGA1Q9Y5H4 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.7■□□□□ 0.9
PCDHGA1Q9Y5H4 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHGA1Q9Y5H4 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHGA1Q9Y5H4 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHGA1Q9Y5H4 MKRN4P-201ENST00000444706 1521 ntBASIC20.7■□□□□ 0.9
PCDHGA1Q9Y5H4 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms