Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
DDX28Q9NUL7 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
DDX28Q9NUL7 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
DDX28Q9NUL7 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.55■□□□□ 0.72
DDX28Q9NUL7 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
DDX28Q9NUL7 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC19.55■□□□□ 0.72
DDX28Q9NUL7 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
DDX28Q9NUL7 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC19.55■□□□□ 0.72
DDX28Q9NUL7 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.55■□□□□ 0.72
DDX28Q9NUL7 MTDHP2-201ENST00000601468 714 ntBASIC19.55■□□□□ 0.72
DDX28Q9NUL7 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
DDX28Q9NUL7 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
DDX28Q9NUL7 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
DDX28Q9NUL7 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
DDX28Q9NUL7 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
DDX28Q9NUL7 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
DDX28Q9NUL7 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
DDX28Q9NUL7 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
DDX28Q9NUL7 AC019069.1-201ENST00000610008 1333 ntBASIC19.54■□□□□ 0.72
DDX28Q9NUL7 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
DDX28Q9NUL7 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
DDX28Q9NUL7 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
DDX28Q9NUL7 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
DDX28Q9NUL7 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
DDX28Q9NUL7 AC239859.2-201ENST00000444165 318 ntBASIC19.54■□□□□ 0.72
DDX28Q9NUL7 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
DDX28Q9NUL7 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
DDX28Q9NUL7 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.54■□□□□ 0.72
DDX28Q9NUL7 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
DDX28Q9NUL7 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.53■□□□□ 0.72
DDX28Q9NUL7 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.53■□□□□ 0.72
DDX28Q9NUL7 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
DDX28Q9NUL7 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
DDX28Q9NUL7 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.53■□□□□ 0.72
DDX28Q9NUL7 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
DDX28Q9NUL7 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
DDX28Q9NUL7 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
DDX28Q9NUL7 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
DDX28Q9NUL7 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
DDX28Q9NUL7 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
DDX28Q9NUL7 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
DDX28Q9NUL7 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.53■□□□□ 0.72
DDX28Q9NUL7 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.53■□□□□ 0.72
DDX28Q9NUL7 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
DDX28Q9NUL7 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
DDX28Q9NUL7 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
DDX28Q9NUL7 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
DDX28Q9NUL7 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
DDX28Q9NUL7 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
DDX28Q9NUL7 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
DDX28Q9NUL7 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
DDX28Q9NUL7 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
DDX28Q9NUL7 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.52■□□□□ 0.72
DDX28Q9NUL7 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC19.52■□□□□ 0.72
DDX28Q9NUL7 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.52■□□□□ 0.72
DDX28Q9NUL7 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
DDX28Q9NUL7 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
DDX28Q9NUL7 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
DDX28Q9NUL7 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
DDX28Q9NUL7 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
DDX28Q9NUL7 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
DDX28Q9NUL7 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
DDX28Q9NUL7 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
DDX28Q9NUL7 AC242852.2-201ENST00000615738 1807 ntBASIC19.51■□□□□ 0.71
DDX28Q9NUL7 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.51■□□□□ 0.71
DDX28Q9NUL7 AL356441.2-201ENST00000443009 864 ntBASIC19.51■□□□□ 0.71
DDX28Q9NUL7 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
DDX28Q9NUL7 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.51■□□□□ 0.71
DDX28Q9NUL7 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
DDX28Q9NUL7 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
DDX28Q9NUL7 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
DDX28Q9NUL7 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
DDX28Q9NUL7 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
DDX28Q9NUL7 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.51■□□□□ 0.71
DDX28Q9NUL7 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
DDX28Q9NUL7 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
DDX28Q9NUL7 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
DDX28Q9NUL7 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
DDX28Q9NUL7 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
DDX28Q9NUL7 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
DDX28Q9NUL7 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
DDX28Q9NUL7 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
DDX28Q9NUL7 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
DDX28Q9NUL7 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
DDX28Q9NUL7 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
DDX28Q9NUL7 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
DDX28Q9NUL7 FP325331.1-202ENST00000623531 1380 ntBASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms