Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.45
UPF3AQ9H1J1 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC24.14■■□□□ 1.45
UPF3AQ9H1J1 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
UPF3AQ9H1J1 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC24.14■■□□□ 1.45
UPF3AQ9H1J1 APTR-203ENST00000430801 583 ntTSL 5 BASIC24.14■■□□□ 1.45
UPF3AQ9H1J1 AC069152.1-201ENST00000438030 544 ntBASIC24.14■■□□□ 1.45
UPF3AQ9H1J1 AF201337.1-201ENST00000520239 748 ntBASIC24.14■■□□□ 1.45
UPF3AQ9H1J1 RGMA-211ENST00000557420 989 ntTSL 3 BASIC24.14■■□□□ 1.45
UPF3AQ9H1J1 AC010536.3-201ENST00000620306 533 ntBASIC24.14■■□□□ 1.45
UPF3AQ9H1J1 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC24.14■■□□□ 1.45
UPF3AQ9H1J1 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
UPF3AQ9H1J1 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC24.13■■□□□ 1.45
UPF3AQ9H1J1 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
UPF3AQ9H1J1 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC24.13■■□□□ 1.45
UPF3AQ9H1J1 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
UPF3AQ9H1J1 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
UPF3AQ9H1J1 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC24.13■■□□□ 1.45
UPF3AQ9H1J1 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
UPF3AQ9H1J1 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC24.13■■□□□ 1.45
UPF3AQ9H1J1 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
UPF3AQ9H1J1 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
UPF3AQ9H1J1 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC24.12■■□□□ 1.45
UPF3AQ9H1J1 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
UPF3AQ9H1J1 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC24.12■■□□□ 1.45
UPF3AQ9H1J1 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
UPF3AQ9H1J1 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC24.12■■□□□ 1.45
UPF3AQ9H1J1 AC066615.1-201ENST00000640911 628 ntBASIC24.12■■□□□ 1.45
UPF3AQ9H1J1 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
UPF3AQ9H1J1 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC24.12■■□□□ 1.45
UPF3AQ9H1J1 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC24.11■■□□□ 1.45
UPF3AQ9H1J1 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
UPF3AQ9H1J1 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC24.11■■□□□ 1.45
UPF3AQ9H1J1 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
UPF3AQ9H1J1 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
UPF3AQ9H1J1 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
UPF3AQ9H1J1 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
UPF3AQ9H1J1 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC24.1■■□□□ 1.45
UPF3AQ9H1J1 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC24.1■■□□□ 1.45
UPF3AQ9H1J1 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
UPF3AQ9H1J1 UQCRFS1P1-201ENST00000435169 820 ntBASIC24.1■■□□□ 1.45
UPF3AQ9H1J1 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC24.1■■□□□ 1.45
UPF3AQ9H1J1 AC105036.2-201ENST00000569468 176 ntBASIC24.1■■□□□ 1.45
UPF3AQ9H1J1 MIR4651-201ENST00000582622 73 ntBASIC24.1■■□□□ 1.45
UPF3AQ9H1J1 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
UPF3AQ9H1J1 AC133041.1-202ENST00000642053 222 ntBASIC24.1■■□□□ 1.45
UPF3AQ9H1J1 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
UPF3AQ9H1J1 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC24.1■■□□□ 1.45
UPF3AQ9H1J1 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC24.1■■□□□ 1.45
UPF3AQ9H1J1 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC24.1■■□□□ 1.45
UPF3AQ9H1J1 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
UPF3AQ9H1J1 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
UPF3AQ9H1J1 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC24.09■■□□□ 1.45
UPF3AQ9H1J1 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC24.09■■□□□ 1.45
UPF3AQ9H1J1 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC24.09■■□□□ 1.45
UPF3AQ9H1J1 FXN-202ENST00000396364 980 ntTSL 5 BASIC24.09■■□□□ 1.45
UPF3AQ9H1J1 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
UPF3AQ9H1J1 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC24.09■■□□□ 1.45
UPF3AQ9H1J1 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
UPF3AQ9H1J1 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
UPF3AQ9H1J1 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
UPF3AQ9H1J1 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
UPF3AQ9H1J1 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.45
UPF3AQ9H1J1 AC092068.2-201ENST00000590491 1708 ntBASIC24.08■■□□□ 1.45
UPF3AQ9H1J1 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC24.08■■□□□ 1.45
UPF3AQ9H1J1 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC24.08■■□□□ 1.45
UPF3AQ9H1J1 AC098934.4-201ENST00000564127 592 ntBASIC24.08■■□□□ 1.45
UPF3AQ9H1J1 SLC7A5P1-201ENST00000568957 537 ntBASIC24.08■■□□□ 1.45
UPF3AQ9H1J1 ANOS2P-203ENST00000472227 1816 ntBASIC24.07■■□□□ 1.44
UPF3AQ9H1J1 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
UPF3AQ9H1J1 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
UPF3AQ9H1J1 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC24.07■■□□□ 1.44
UPF3AQ9H1J1 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC24.07■■□□□ 1.44
UPF3AQ9H1J1 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC24.07■■□□□ 1.44
UPF3AQ9H1J1 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC24.07■■□□□ 1.44
UPF3AQ9H1J1 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
UPF3AQ9H1J1 AP004607.7-201ENST00000527152 1677 ntBASIC24.06■■□□□ 1.44
UPF3AQ9H1J1 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
UPF3AQ9H1J1 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
UPF3AQ9H1J1 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC24.06■■□□□ 1.44
UPF3AQ9H1J1 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
UPF3AQ9H1J1 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC24.06■■□□□ 1.44
UPF3AQ9H1J1 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC24.06■■□□□ 1.44
UPF3AQ9H1J1 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC24.05■■□□□ 1.44
UPF3AQ9H1J1 LINC01960-201ENST00000563759 1884 ntBASIC24.05■■□□□ 1.44
UPF3AQ9H1J1 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
UPF3AQ9H1J1 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
UPF3AQ9H1J1 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC24.05■■□□□ 1.44
UPF3AQ9H1J1 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC24.05■■□□□ 1.44
UPF3AQ9H1J1 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC24.05■■□□□ 1.44
UPF3AQ9H1J1 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
UPF3AQ9H1J1 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
UPF3AQ9H1J1 AC013268.1-206ENST00000638368 961 ntBASIC24.05■■□□□ 1.44
UPF3AQ9H1J1 AC112229.1-201ENST00000639295 961 ntBASIC24.05■■□□□ 1.44
UPF3AQ9H1J1 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC24.04■■□□□ 1.44
UPF3AQ9H1J1 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
UPF3AQ9H1J1 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
UPF3AQ9H1J1 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC24.04■■□□□ 1.44
UPF3AQ9H1J1 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC24.04■■□□□ 1.44
UPF3AQ9H1J1 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC24.04■■□□□ 1.44
UPF3AQ9H1J1 EEF1DP3-203ENST00000566025 782 ntBASIC24.04■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms