Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
RTF1Q92541 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC28.17■■■□□ 2.1
RTF1Q92541 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
RTF1Q92541 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
RTF1Q92541 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC28.17■■■□□ 2.1
RTF1Q92541 AC006015.1-201ENST00000429970 570 ntBASIC28.17■■■□□ 2.1
RTF1Q92541 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC28.17■■■□□ 2.1
RTF1Q92541 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
RTF1Q92541 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
RTF1Q92541 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC28.17■■■□□ 2.1
RTF1Q92541 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC28.17■■■□□ 2.1
RTF1Q92541 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC28.16■■■□□ 2.1
RTF1Q92541 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC28.16■■■□□ 2.1
RTF1Q92541 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC28.16■■■□□ 2.1
RTF1Q92541 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC28.16■■■□□ 2.1
RTF1Q92541 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
RTF1Q92541 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC28.16■■■□□ 2.1
RTF1Q92541 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC28.16■■■□□ 2.1
RTF1Q92541 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
RTF1Q92541 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC28.15■■■□□ 2.1
RTF1Q92541 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC28.15■■■□□ 2.1
RTF1Q92541 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
RTF1Q92541 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
RTF1Q92541 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
RTF1Q92541 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
RTF1Q92541 HSCB-202ENST00000398941 955 ntTSL 2 BASIC28.15■■■□□ 2.1
RTF1Q92541 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC28.15■■■□□ 2.1
RTF1Q92541 VPS53-216ENST00000574029 585 ntTSL 4 BASIC28.15■■■□□ 2.1
RTF1Q92541 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
RTF1Q92541 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
RTF1Q92541 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
RTF1Q92541 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
RTF1Q92541 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
RTF1Q92541 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
RTF1Q92541 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
RTF1Q92541 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
RTF1Q92541 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
RTF1Q92541 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC28.14■■■□□ 2.1
RTF1Q92541 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC28.14■■■□□ 2.1
RTF1Q92541 MFF-207ENST00000409565 1548 ntTSL 2 BASIC28.13■■■□□ 2.09
RTF1Q92541 ESRRAP2-201ENST00000418437 1549 ntBASIC28.13■■■□□ 2.09
RTF1Q92541 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
RTF1Q92541 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
RTF1Q92541 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
RTF1Q92541 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC28.13■■■□□ 2.09
RTF1Q92541 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC28.13■■■□□ 2.09
RTF1Q92541 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC28.13■■■□□ 2.09
RTF1Q92541 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC28.13■■■□□ 2.09
RTF1Q92541 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
RTF1Q92541 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
RTF1Q92541 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
RTF1Q92541 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
RTF1Q92541 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
RTF1Q92541 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
RTF1Q92541 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC28.12■■■□□ 2.09
RTF1Q92541 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
RTF1Q92541 AC139530.1-201ENST00000575312 1977 ntBASIC28.12■■■□□ 2.09
RTF1Q92541 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
RTF1Q92541 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC28.12■■■□□ 2.09
RTF1Q92541 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC28.12■■■□□ 2.09
RTF1Q92541 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC28.12■■■□□ 2.09
RTF1Q92541 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC28.12■■■□□ 2.09
RTF1Q92541 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC28.12■■■□□ 2.09
RTF1Q92541 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC28.12■■■□□ 2.09
RTF1Q92541 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC28.12■■■□□ 2.09
RTF1Q92541 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC28.12■■■□□ 2.09
RTF1Q92541 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
RTF1Q92541 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
RTF1Q92541 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
RTF1Q92541 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC28.11■■■□□ 2.09
RTF1Q92541 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC28.11■■■□□ 2.09
RTF1Q92541 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
RTF1Q92541 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC28.11■■■□□ 2.09
RTF1Q92541 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
RTF1Q92541 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC28.11■■■□□ 2.09
RTF1Q92541 AC104187.1-201ENST00000607510 612 ntBASIC28.11■■■□□ 2.09
RTF1Q92541 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
RTF1Q92541 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
RTF1Q92541 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
RTF1Q92541 FXN-202ENST00000396364 980 ntTSL 5 BASIC28.1■■■□□ 2.09
RTF1Q92541 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
RTF1Q92541 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC28.1■■■□□ 2.09
RTF1Q92541 C9orf163-202ENST00000624034 2573 ntBASIC28.1■■■□□ 2.09
RTF1Q92541 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
RTF1Q92541 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
RTF1Q92541 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC28.1■■■□□ 2.09
RTF1Q92541 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
RTF1Q92541 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
RTF1Q92541 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC28.09■■■□□ 2.09
RTF1Q92541 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC28.09■■■□□ 2.09
RTF1Q92541 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC28.09■■■□□ 2.09
RTF1Q92541 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC28.09■■■□□ 2.09
RTF1Q92541 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC28.09■■■□□ 2.09
RTF1Q92541 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC28.09■■■□□ 2.09
RTF1Q92541 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
RTF1Q92541 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
RTF1Q92541 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC28.09■■■□□ 2.09
RTF1Q92541 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
RTF1Q92541 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
RTF1Q92541 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC28.08■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms