Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
SLC44A3Q8N4M1 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SLC44A3Q8N4M1 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC22.2■■□□□ 1.14
SLC44A3Q8N4M1 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SLC44A3Q8N4M1 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
SLC44A3Q8N4M1 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SLC44A3Q8N4M1 MIPEPP3-201ENST00000412105 444 ntBASIC22.2■■□□□ 1.14
SLC44A3Q8N4M1 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
SLC44A3Q8N4M1 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
SLC44A3Q8N4M1 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SLC44A3Q8N4M1 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC22.2■■□□□ 1.14
SLC44A3Q8N4M1 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
SLC44A3Q8N4M1 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC22.2■■□□□ 1.14
SLC44A3Q8N4M1 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC22.2■■□□□ 1.14
SLC44A3Q8N4M1 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SLC44A3Q8N4M1 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
SLC44A3Q8N4M1 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
SLC44A3Q8N4M1 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
SLC44A3Q8N4M1 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
SLC44A3Q8N4M1 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
SLC44A3Q8N4M1 BMP1-204ENST00000397814 836 ntTSL 4 BASIC22.19■■□□□ 1.14
SLC44A3Q8N4M1 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC22.19■■□□□ 1.14
SLC44A3Q8N4M1 MARS-234ENST00000630571 216 ntTSL 5 BASIC22.19■■□□□ 1.14
SLC44A3Q8N4M1 MARS-235ENST00000630803 183 ntTSL 3 BASIC22.19■■□□□ 1.14
SLC44A3Q8N4M1 AC013268.1-206ENST00000638368 961 ntBASIC22.19■■□□□ 1.14
SLC44A3Q8N4M1 AC112229.1-201ENST00000639295 961 ntBASIC22.19■■□□□ 1.14
SLC44A3Q8N4M1 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SLC44A3Q8N4M1 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
SLC44A3Q8N4M1 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC22.19■■□□□ 1.14
SLC44A3Q8N4M1 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SLC44A3Q8N4M1 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
SLC44A3Q8N4M1 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC22.19■■□□□ 1.14
SLC44A3Q8N4M1 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
SLC44A3Q8N4M1 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
SLC44A3Q8N4M1 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC22.18■■□□□ 1.14
SLC44A3Q8N4M1 AC068338.2-201ENST00000563278 1430 ntBASIC22.18■■□□□ 1.14
SLC44A3Q8N4M1 PRORSD1P-201ENST00000295112 541 ntBASIC22.18■■□□□ 1.14
SLC44A3Q8N4M1 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC22.18■■□□□ 1.14
SLC44A3Q8N4M1 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
SLC44A3Q8N4M1 PPP1R14BP2-201ENST00000426284 444 ntBASIC22.18■■□□□ 1.14
SLC44A3Q8N4M1 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC22.18■■□□□ 1.14
SLC44A3Q8N4M1 UQCRFS1P1-201ENST00000435169 820 ntBASIC22.18■■□□□ 1.14
SLC44A3Q8N4M1 TERF1P5-201ENST00000477545 1207 ntBASIC22.18■■□□□ 1.14
SLC44A3Q8N4M1 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC22.18■■□□□ 1.14
SLC44A3Q8N4M1 LINC01124-201ENST00000409786 2117 ntBASIC22.18■■□□□ 1.14
SLC44A3Q8N4M1 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SLC44A3Q8N4M1 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC22.17■■□□□ 1.14
SLC44A3Q8N4M1 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC22.17■■□□□ 1.14
SLC44A3Q8N4M1 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SLC44A3Q8N4M1 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SLC44A3Q8N4M1 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
SLC44A3Q8N4M1 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SLC44A3Q8N4M1 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SLC44A3Q8N4M1 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC22.17■■□□□ 1.14
SLC44A3Q8N4M1 SLC7A5P1-201ENST00000568957 537 ntBASIC22.17■■□□□ 1.14
SLC44A3Q8N4M1 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC22.17■■□□□ 1.14
SLC44A3Q8N4M1 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SLC44A3Q8N4M1 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SLC44A3Q8N4M1 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SLC44A3Q8N4M1 MKRN4P-201ENST00000444706 1521 ntBASIC22.16■■□□□ 1.14
SLC44A3Q8N4M1 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC22.16■■□□□ 1.14
SLC44A3Q8N4M1 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
SLC44A3Q8N4M1 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC22.16■■□□□ 1.14
SLC44A3Q8N4M1 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
SLC44A3Q8N4M1 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
SLC44A3Q8N4M1 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC22.16■■□□□ 1.14
SLC44A3Q8N4M1 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC22.16■■□□□ 1.14
SLC44A3Q8N4M1 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC22.16■■□□□ 1.14
SLC44A3Q8N4M1 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
SLC44A3Q8N4M1 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SLC44A3Q8N4M1 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
SLC44A3Q8N4M1 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
SLC44A3Q8N4M1 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SLC44A3Q8N4M1 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SLC44A3Q8N4M1 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC22.15■■□□□ 1.14
SLC44A3Q8N4M1 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC22.15■■□□□ 1.14
SLC44A3Q8N4M1 FXN-202ENST00000396364 980 ntTSL 5 BASIC22.15■■□□□ 1.14
SLC44A3Q8N4M1 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
SLC44A3Q8N4M1 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC22.15■■□□□ 1.14
SLC44A3Q8N4M1 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC22.15■■□□□ 1.14
SLC44A3Q8N4M1 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC22.15■■□□□ 1.14
SLC44A3Q8N4M1 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
SLC44A3Q8N4M1 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SLC44A3Q8N4M1 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SLC44A3Q8N4M1 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SLC44A3Q8N4M1 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SLC44A3Q8N4M1 BET1L-204ENST00000410108 637 ntTSL 3 BASIC22.14■■□□□ 1.13
SLC44A3Q8N4M1 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
SLC44A3Q8N4M1 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC22.14■■□□□ 1.13
SLC44A3Q8N4M1 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC22.14■■□□□ 1.13
SLC44A3Q8N4M1 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC22.14■■□□□ 1.13
SLC44A3Q8N4M1 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC22.14■■□□□ 1.13
SLC44A3Q8N4M1 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SLC44A3Q8N4M1 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC22.14■■□□□ 1.13
SLC44A3Q8N4M1 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
SLC44A3Q8N4M1 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SLC44A3Q8N4M1 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
SLC44A3Q8N4M1 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC22.13■■□□□ 1.13
SLC44A3Q8N4M1 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC22.13■■□□□ 1.13
SLC44A3Q8N4M1 CYP2T1P-201ENST00000432607 1285 ntBASIC22.13■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms