Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
DEPDC4Q8N2C3 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
DEPDC4Q8N2C3 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
DEPDC4Q8N2C3 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.93■□□□□ 0.78
DEPDC4Q8N2C3 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
DEPDC4Q8N2C3 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
DEPDC4Q8N2C3 AC005229.4-201ENST00000610085 2198 ntBASIC19.93■□□□□ 0.78
DEPDC4Q8N2C3 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
DEPDC4Q8N2C3 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
DEPDC4Q8N2C3 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
DEPDC4Q8N2C3 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
DEPDC4Q8N2C3 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.92■□□□□ 0.78
DEPDC4Q8N2C3 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.92■□□□□ 0.78
DEPDC4Q8N2C3 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.92■□□□□ 0.78
DEPDC4Q8N2C3 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.92■□□□□ 0.78
DEPDC4Q8N2C3 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
DEPDC4Q8N2C3 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
DEPDC4Q8N2C3 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
DEPDC4Q8N2C3 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
DEPDC4Q8N2C3 LINC01529-204ENST00000636474 1715 ntBASIC19.91■□□□□ 0.78
DEPDC4Q8N2C3 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
DEPDC4Q8N2C3 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.91■□□□□ 0.78
DEPDC4Q8N2C3 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
DEPDC4Q8N2C3 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.91■□□□□ 0.78
DEPDC4Q8N2C3 AL136116.3-201ENST00000402907 1138 ntBASIC19.91■□□□□ 0.78
DEPDC4Q8N2C3 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
DEPDC4Q8N2C3 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
DEPDC4Q8N2C3 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.91■□□□□ 0.78
DEPDC4Q8N2C3 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
DEPDC4Q8N2C3 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
DEPDC4Q8N2C3 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
DEPDC4Q8N2C3 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.91■□□□□ 0.78
DEPDC4Q8N2C3 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.91■□□□□ 0.78
DEPDC4Q8N2C3 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
DEPDC4Q8N2C3 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 AC131281.2-201ENST00000520478 145 ntBASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 AC005703.6-201ENST00000623265 1329 ntBASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
DEPDC4Q8N2C3 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
DEPDC4Q8N2C3 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
DEPDC4Q8N2C3 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
DEPDC4Q8N2C3 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.89■□□□□ 0.77
DEPDC4Q8N2C3 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
DEPDC4Q8N2C3 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.89■□□□□ 0.77
DEPDC4Q8N2C3 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
DEPDC4Q8N2C3 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
DEPDC4Q8N2C3 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.89■□□□□ 0.77
DEPDC4Q8N2C3 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
DEPDC4Q8N2C3 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
DEPDC4Q8N2C3 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
DEPDC4Q8N2C3 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.88■□□□□ 0.77
DEPDC4Q8N2C3 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.88■□□□□ 0.77
DEPDC4Q8N2C3 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.88■□□□□ 0.77
DEPDC4Q8N2C3 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
DEPDC4Q8N2C3 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
DEPDC4Q8N2C3 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
DEPDC4Q8N2C3 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
DEPDC4Q8N2C3 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
DEPDC4Q8N2C3 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
DEPDC4Q8N2C3 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
DEPDC4Q8N2C3 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
DEPDC4Q8N2C3 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
DEPDC4Q8N2C3 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
DEPDC4Q8N2C3 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 FP325331.1-202ENST00000623531 1380 ntBASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 CLTA-206ENST00000466396 695 ntTSL 2 BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms