Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NUDCD3Q8IVD9 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.35■■□□□ 1.01
NUDCD3Q8IVD9 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.35■■□□□ 1.01
NUDCD3Q8IVD9 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NUDCD3Q8IVD9 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.35■■□□□ 1.01
NUDCD3Q8IVD9 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
NUDCD3Q8IVD9 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NUDCD3Q8IVD9 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
NUDCD3Q8IVD9 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.35■■□□□ 1.01
NUDCD3Q8IVD9 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.35■■□□□ 1.01
NUDCD3Q8IVD9 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
NUDCD3Q8IVD9 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NUDCD3Q8IVD9 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NUDCD3Q8IVD9 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NUDCD3Q8IVD9 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
NUDCD3Q8IVD9 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
NUDCD3Q8IVD9 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.34■■□□□ 1.01
NUDCD3Q8IVD9 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
NUDCD3Q8IVD9 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC21.34■■□□□ 1.01
NUDCD3Q8IVD9 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NUDCD3Q8IVD9 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
NUDCD3Q8IVD9 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.34■■□□□ 1.01
NUDCD3Q8IVD9 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.34■■□□□ 1.01
NUDCD3Q8IVD9 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
NUDCD3Q8IVD9 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
NUDCD3Q8IVD9 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
NUDCD3Q8IVD9 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
NUDCD3Q8IVD9 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
NUDCD3Q8IVD9 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
NUDCD3Q8IVD9 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.33■■□□□ 1.01
NUDCD3Q8IVD9 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.33■■□□□ 1.01
NUDCD3Q8IVD9 AL033527.3-201ENST00000566366 1196 ntBASIC21.33■■□□□ 1.01
NUDCD3Q8IVD9 AC012354.3-201ENST00000623734 483 ntBASIC21.33■■□□□ 1.01
NUDCD3Q8IVD9 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
NUDCD3Q8IVD9 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC21.33■■□□□ 1
NUDCD3Q8IVD9 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
NUDCD3Q8IVD9 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
NUDCD3Q8IVD9 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
NUDCD3Q8IVD9 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.33■■□□□ 1
NUDCD3Q8IVD9 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
NUDCD3Q8IVD9 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.33■■□□□ 1
NUDCD3Q8IVD9 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.32■■□□□ 1
NUDCD3Q8IVD9 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
NUDCD3Q8IVD9 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NUDCD3Q8IVD9 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.32■■□□□ 1
NUDCD3Q8IVD9 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.32■■□□□ 1
NUDCD3Q8IVD9 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NUDCD3Q8IVD9 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.32■■□□□ 1
NUDCD3Q8IVD9 BX664725.1-201ENST00000438252 379 ntBASIC21.32■■□□□ 1
NUDCD3Q8IVD9 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.32■■□□□ 1
NUDCD3Q8IVD9 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.32■■□□□ 1
NUDCD3Q8IVD9 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.32■■□□□ 1
NUDCD3Q8IVD9 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
NUDCD3Q8IVD9 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NUDCD3Q8IVD9 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.32■■□□□ 1
NUDCD3Q8IVD9 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NUDCD3Q8IVD9 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
NUDCD3Q8IVD9 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.32■■□□□ 1
NUDCD3Q8IVD9 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NUDCD3Q8IVD9 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
NUDCD3Q8IVD9 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.31■■□□□ 1
NUDCD3Q8IVD9 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NUDCD3Q8IVD9 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.31■■□□□ 1
NUDCD3Q8IVD9 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NUDCD3Q8IVD9 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NUDCD3Q8IVD9 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
NUDCD3Q8IVD9 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.31■■□□□ 1
NUDCD3Q8IVD9 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.31■■□□□ 1
NUDCD3Q8IVD9 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.31■■□□□ 1
NUDCD3Q8IVD9 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.31■■□□□ 1
NUDCD3Q8IVD9 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
NUDCD3Q8IVD9 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NUDCD3Q8IVD9 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.31■■□□□ 1
NUDCD3Q8IVD9 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.31■■□□□ 1
NUDCD3Q8IVD9 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.3■■□□□ 1
NUDCD3Q8IVD9 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.3■■□□□ 1
NUDCD3Q8IVD9 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
NUDCD3Q8IVD9 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
NUDCD3Q8IVD9 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.3■■□□□ 1
NUDCD3Q8IVD9 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
NUDCD3Q8IVD9 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.3■■□□□ 1
NUDCD3Q8IVD9 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.3■■□□□ 1
NUDCD3Q8IVD9 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.3■■□□□ 1
NUDCD3Q8IVD9 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC21.3■■□□□ 1
NUDCD3Q8IVD9 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.3■■□□□ 1
NUDCD3Q8IVD9 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.3■■□□□ 1
NUDCD3Q8IVD9 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NUDCD3Q8IVD9 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
NUDCD3Q8IVD9 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
NUDCD3Q8IVD9 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.3■■□□□ 1
NUDCD3Q8IVD9 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
NUDCD3Q8IVD9 C17orf82-201ENST00000623772 1530 ntBASIC21.29■■□□□ 1
NUDCD3Q8IVD9 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.29■■□□□ 1
NUDCD3Q8IVD9 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.29■■□□□ 1
NUDCD3Q8IVD9 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
NUDCD3Q8IVD9 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NUDCD3Q8IVD9 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.29■■□□□ 1
NUDCD3Q8IVD9 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.29■■□□□ 1
NUDCD3Q8IVD9 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
NUDCD3Q8IVD9 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms