Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 AC005082.1-201ENST00000413042 2259 ntBASIC13.53□□□□□ -0.24
LINC00643Q86TS7 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 H19-210ENST00000439725 1929 ntTSL 2 BASIC13.52□□□□□ -0.24
LINC00643Q86TS7 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
LINC00643Q86TS7 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
LINC00643Q86TS7 FEM1AP4-201ENST00000443167 1987 ntBASIC13.52□□□□□ -0.24
LINC00643Q86TS7 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
LINC00643Q86TS7 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
LINC00643Q86TS7 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
LINC00643Q86TS7 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
LINC00643Q86TS7 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC13.52□□□□□ -0.25
LINC00643Q86TS7 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
LINC00643Q86TS7 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
LINC00643Q86TS7 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
LINC00643Q86TS7 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
LINC00643Q86TS7 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
LINC00643Q86TS7 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
LINC00643Q86TS7 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
LINC00643Q86TS7 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
LINC00643Q86TS7 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC13.52□□□□□ -0.25
LINC00643Q86TS7 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
LINC00643Q86TS7 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
LINC00643Q86TS7 WAC-202ENST00000347934 2839 ntTSL 5 BASIC13.52□□□□□ -0.25
LINC00643Q86TS7 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
LINC00643Q86TS7 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
LINC00643Q86TS7 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
LINC00643Q86TS7 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 AC020916.1-201ENST00000587762 1774 ntBASIC13.51□□□□□ -0.25
LINC00643Q86TS7 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00643Q86TS7 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
LINC00643Q86TS7 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms