Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
FOXA1P55317 AC010525.1-201ENST00000585559 441 ntBASIC20.88■□□□□ 0.93
FOXA1P55317 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
FOXA1P55317 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.88■□□□□ 0.93
FOXA1P55317 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
FOXA1P55317 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.88■□□□□ 0.93
FOXA1P55317 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
FOXA1P55317 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.87■□□□□ 0.93
FOXA1P55317 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
FOXA1P55317 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
FOXA1P55317 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
FOXA1P55317 SRD5A1P1-201ENST00000442297 786 ntBASIC20.87■□□□□ 0.93
FOXA1P55317 OR2I1P-207ENST00000453522 948 ntBASIC20.87■□□□□ 0.93
FOXA1P55317 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
FOXA1P55317 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
FOXA1P55317 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
FOXA1P55317 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.87■□□□□ 0.93
FOXA1P55317 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.87■□□□□ 0.93
FOXA1P55317 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
FOXA1P55317 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
FOXA1P55317 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
FOXA1P55317 OR7E47P-201ENST00000546390 1422 ntBASIC20.87■□□□□ 0.93
FOXA1P55317 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
FOXA1P55317 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
FOXA1P55317 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
FOXA1P55317 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
FOXA1P55317 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
FOXA1P55317 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.86■□□□□ 0.93
FOXA1P55317 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
FOXA1P55317 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
FOXA1P55317 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.86■□□□□ 0.93
FOXA1P55317 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
FOXA1P55317 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.85■□□□□ 0.93
FOXA1P55317 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
FOXA1P55317 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.85■□□□□ 0.93
FOXA1P55317 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.85■□□□□ 0.93
FOXA1P55317 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.85■□□□□ 0.93
FOXA1P55317 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.85■□□□□ 0.93
FOXA1P55317 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
FOXA1P55317 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
FOXA1P55317 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
FOXA1P55317 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
FOXA1P55317 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
FOXA1P55317 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
FOXA1P55317 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.84■□□□□ 0.93
FOXA1P55317 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
FOXA1P55317 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
FOXA1P55317 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
FOXA1P55317 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.84■□□□□ 0.93
FOXA1P55317 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
FOXA1P55317 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
FOXA1P55317 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.84■□□□□ 0.93
FOXA1P55317 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
FOXA1P55317 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
FOXA1P55317 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
FOXA1P55317 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.84■□□□□ 0.93
FOXA1P55317 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.84■□□□□ 0.93
FOXA1P55317 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
FOXA1P55317 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
FOXA1P55317 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.83■□□□□ 0.93
FOXA1P55317 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
FOXA1P55317 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.83■□□□□ 0.93
FOXA1P55317 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
FOXA1P55317 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
FOXA1P55317 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
FOXA1P55317 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
FOXA1P55317 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
FOXA1P55317 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
FOXA1P55317 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
FOXA1P55317 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
FOXA1P55317 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
FOXA1P55317 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
FOXA1P55317 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXA1P55317 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXA1P55317 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
FOXA1P55317 AL356441.2-201ENST00000443009 864 ntBASIC20.82■□□□□ 0.92
FOXA1P55317 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.82■□□□□ 0.92
FOXA1P55317 MIR4466-201ENST00000606121 54 ntBASIC20.82■□□□□ 0.92
FOXA1P55317 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
FOXA1P55317 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.82■□□□□ 0.92
FOXA1P55317 FEM1AP4-201ENST00000443167 1987 ntBASIC20.82■□□□□ 0.92
FOXA1P55317 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.82■□□□□ 0.92
FOXA1P55317 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.82■□□□□ 0.92
FOXA1P55317 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
FOXA1P55317 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.82■□□□□ 0.92
FOXA1P55317 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXA1P55317 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
FOXA1P55317 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
FOXA1P55317 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXA1P55317 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXA1P55317 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.81■□□□□ 0.92
FOXA1P55317 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.81■□□□□ 0.92
FOXA1P55317 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXA1P55317 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXA1P55317 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
FOXA1P55317 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.81■□□□□ 0.92
FOXA1P55317 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXA1P55317 AC068587.7-201ENST00000641602 218 ntBASIC20.81■□□□□ 0.92
FOXA1P55317 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.81■□□□□ 0.92
FOXA1P55317 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms