Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC25.07■■□□□ 1.6
HMGCS2P54868 CNN2P6-201ENST00000439038 900 ntBASIC25.07■■□□□ 1.6
HMGCS2P54868 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC25.07■■□□□ 1.6
HMGCS2P54868 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC25.07■■□□□ 1.6
HMGCS2P54868 TMEM191A-211ENST00000637163 1067 ntBASIC25.07■■□□□ 1.6
HMGCS2P54868 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
HMGCS2P54868 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
HMGCS2P54868 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
HMGCS2P54868 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
HMGCS2P54868 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
HMGCS2P54868 AC010141.2-201ENST00000452426 721 ntBASIC25.06■■□□□ 1.6
HMGCS2P54868 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC25.06■■□□□ 1.6
HMGCS2P54868 KLF13-207ENST00000560473 489 ntTSL 3 BASIC25.06■■□□□ 1.6
HMGCS2P54868 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC25.06■■□□□ 1.6
HMGCS2P54868 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
HMGCS2P54868 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
HMGCS2P54868 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
HMGCS2P54868 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC25.05■■□□□ 1.6
HMGCS2P54868 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
HMGCS2P54868 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
HMGCS2P54868 TSPY20P-201ENST00000450910 630 ntBASIC25.05■■□□□ 1.6
HMGCS2P54868 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC25.05■■□□□ 1.6
HMGCS2P54868 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC25.05■■□□□ 1.6
HMGCS2P54868 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
HMGCS2P54868 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
HMGCS2P54868 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
HMGCS2P54868 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
HMGCS2P54868 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC25.04■■□□□ 1.6
HMGCS2P54868 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
HMGCS2P54868 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
HMGCS2P54868 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC25.04■■□□□ 1.6
HMGCS2P54868 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
HMGCS2P54868 SLC29A4P1-201ENST00000398760 971 ntBASIC25.04■■□□□ 1.6
HMGCS2P54868 KRT18P6-201ENST00000555540 1265 ntBASIC25.04■■□□□ 1.6
HMGCS2P54868 AC138907.5-202ENST00000569484 235 ntBASIC25.04■■□□□ 1.6
HMGCS2P54868 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC25.04■■□□□ 1.6
HMGCS2P54868 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
HMGCS2P54868 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC25.03■■□□□ 1.6
HMGCS2P54868 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
HMGCS2P54868 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC25.03■■□□□ 1.6
HMGCS2P54868 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC25.03■■□□□ 1.6
HMGCS2P54868 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC25.03■■□□□ 1.6
HMGCS2P54868 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
HMGCS2P54868 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC25.03■■□□□ 1.6
HMGCS2P54868 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC25.03■■□□□ 1.6
HMGCS2P54868 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
HMGCS2P54868 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC25.03■■□□□ 1.6
HMGCS2P54868 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
HMGCS2P54868 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC25.02■■□□□ 1.6
HMGCS2P54868 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC25.02■■□□□ 1.6
HMGCS2P54868 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
HMGCS2P54868 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC25.02■■□□□ 1.6
HMGCS2P54868 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC25.02■■□□□ 1.6
HMGCS2P54868 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
HMGCS2P54868 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
HMGCS2P54868 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC25.02■■□□□ 1.6
HMGCS2P54868 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC25.02■■□□□ 1.6
HMGCS2P54868 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC25.02■■□□□ 1.6
HMGCS2P54868 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC25.02■■□□□ 1.6
HMGCS2P54868 AC010536.3-201ENST00000620306 533 ntBASIC25.02■■□□□ 1.6
HMGCS2P54868 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
HMGCS2P54868 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
HMGCS2P54868 PFKL-212ENST00000628044 129 ntTSL 3 BASIC25.02■■□□□ 1.6
HMGCS2P54868 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
HMGCS2P54868 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC25.01■■□□□ 1.59
HMGCS2P54868 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
HMGCS2P54868 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
HMGCS2P54868 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC25.01■■□□□ 1.59
HMGCS2P54868 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC25.01■■□□□ 1.59
HMGCS2P54868 FXN-202ENST00000396364 980 ntTSL 5 BASIC25.01■■□□□ 1.59
HMGCS2P54868 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC25.01■■□□□ 1.59
HMGCS2P54868 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC25.01■■□□□ 1.59
HMGCS2P54868 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
HMGCS2P54868 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
HMGCS2P54868 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
HMGCS2P54868 OR7E47P-201ENST00000546390 1422 ntBASIC25.01■■□□□ 1.59
HMGCS2P54868 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC25.01■■□□□ 1.59
HMGCS2P54868 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC25■■□□□ 1.59
HMGCS2P54868 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC25■■□□□ 1.59
HMGCS2P54868 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC25■■□□□ 1.59
HMGCS2P54868 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC25■■□□□ 1.59
HMGCS2P54868 AF201337.1-201ENST00000520239 748 ntBASIC25■■□□□ 1.59
HMGCS2P54868 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC25■■□□□ 1.59
HMGCS2P54868 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
HMGCS2P54868 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC25■■□□□ 1.59
HMGCS2P54868 LINC00526-201ENST00000581067 1875 ntBASIC25■■□□□ 1.59
HMGCS2P54868 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
HMGCS2P54868 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC25■■□□□ 1.59
HMGCS2P54868 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
HMGCS2P54868 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
HMGCS2P54868 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
HMGCS2P54868 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
HMGCS2P54868 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
HMGCS2P54868 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC24.99■■□□□ 1.59
HMGCS2P54868 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
HMGCS2P54868 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
HMGCS2P54868 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC24.99■■□□□ 1.59
HMGCS2P54868 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC24.99■■□□□ 1.59
HMGCS2P54868 KRT18P20-201ENST00000548986 1279 ntBASIC24.99■■□□□ 1.59
HMGCS2P54868 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms