Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL5A1P20908 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
COL5A1P20908 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL5A1P20908 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.89■□□□□ 0.93
COL5A1P20908 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.89■□□□□ 0.93
COL5A1P20908 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.89■□□□□ 0.93
COL5A1P20908 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL5A1P20908 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.89■□□□□ 0.93
COL5A1P20908 AC133041.1-202ENST00000642053 222 ntBASIC20.89■□□□□ 0.93
COL5A1P20908 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.89■□□□□ 0.93
COL5A1P20908 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL5A1P20908 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.89■□□□□ 0.93
COL5A1P20908 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL5A1P20908 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.89■□□□□ 0.93
COL5A1P20908 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A1P20908 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A1P20908 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A1P20908 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A1P20908 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A1P20908 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A1P20908 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A1P20908 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A1P20908 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A1P20908 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A1P20908 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A1P20908 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A1P20908 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.88■□□□□ 0.93
COL5A1P20908 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A1P20908 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.88■□□□□ 0.93
COL5A1P20908 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.88■□□□□ 0.93
COL5A1P20908 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A1P20908 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
COL5A1P20908 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
COL5A1P20908 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A1P20908 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.88■□□□□ 0.93
COL5A1P20908 AC007322.4-201ENST00000509611 723 ntBASIC20.88■□□□□ 0.93
COL5A1P20908 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.88■□□□□ 0.93
COL5A1P20908 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
COL5A1P20908 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL5A1P20908 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL5A1P20908 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL5A1P20908 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL5A1P20908 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.87■□□□□ 0.93
COL5A1P20908 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL5A1P20908 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.86■□□□□ 0.93
COL5A1P20908 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL5A1P20908 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
COL5A1P20908 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
COL5A1P20908 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL5A1P20908 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL5A1P20908 DUSP8P5-201ENST00000422884 1815 ntBASIC20.86■□□□□ 0.93
COL5A1P20908 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.86■□□□□ 0.93
COL5A1P20908 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL5A1P20908 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL5A1P20908 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL5A1P20908 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL5A1P20908 AC093827.2-201ENST00000512654 315 ntBASIC20.85■□□□□ 0.93
COL5A1P20908 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL5A1P20908 AL034346.1-201ENST00000568244 1277 ntBASIC20.85■□□□□ 0.93
COL5A1P20908 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.85■□□□□ 0.93
COL5A1P20908 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL5A1P20908 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL5A1P20908 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL5A1P20908 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL5A1P20908 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.85■□□□□ 0.93
COL5A1P20908 ITM2C-210ENST00000620962 501 ntBASIC20.85■□□□□ 0.93
COL5A1P20908 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.85■□□□□ 0.93
COL5A1P20908 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.85■□□□□ 0.93
COL5A1P20908 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
COL5A1P20908 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
COL5A1P20908 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL5A1P20908 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL5A1P20908 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL5A1P20908 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL5A1P20908 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.84■□□□□ 0.93
COL5A1P20908 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL5A1P20908 AC105036.2-201ENST00000569468 176 ntBASIC20.84■□□□□ 0.93
COL5A1P20908 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.84■□□□□ 0.93
COL5A1P20908 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
COL5A1P20908 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.84■□□□□ 0.93
COL5A1P20908 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL5A1P20908 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL5A1P20908 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
COL5A1P20908 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL5A1P20908 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.83■□□□□ 0.93
COL5A1P20908 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL5A1P20908 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.92
COL5A1P20908 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.92
COL5A1P20908 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL5A1P20908 POU5F1P3-201ENST00000428824 1078 ntBASIC20.83■□□□□ 0.92
COL5A1P20908 FAM201B-201ENST00000458407 597 ntBASIC20.83■□□□□ 0.92
COL5A1P20908 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.83■□□□□ 0.92
COL5A1P20908 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.83■□□□□ 0.92
COL5A1P20908 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL5A1P20908 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.82■□□□□ 0.92
COL5A1P20908 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL5A1P20908 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL5A1P20908 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.82■□□□□ 0.92
COL5A1P20908 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
COL5A1P20908 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms