Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.47
ABCA1O95477 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
ABCA1O95477 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA1O95477 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA1O95477 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA1O95477 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.01■□□□□ 0.47
ABCA1O95477 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
ABCA1O95477 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA1O95477 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA1O95477 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA1O95477 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA1O95477 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA1O95477 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA1O95477 AL138781.1-201ENST00000566567 1274 ntBASIC18.01■□□□□ 0.47
ABCA1O95477 AC104187.1-201ENST00000607510 612 ntBASIC18.01■□□□□ 0.47
ABCA1O95477 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC18■□□□□ 0.47
ABCA1O95477 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ABCA1O95477 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ABCA1O95477 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
ABCA1O95477 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ABCA1O95477 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18■□□□□ 0.47
ABCA1O95477 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18■□□□□ 0.47
ABCA1O95477 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
ABCA1O95477 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ABCA1O95477 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC18■□□□□ 0.47
ABCA1O95477 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC17.99■□□□□ 0.47
ABCA1O95477 KRT87P-202ENST00000534226 1464 ntBASIC17.99■□□□□ 0.47
ABCA1O95477 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ABCA1O95477 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC17.99■□□□□ 0.47
ABCA1O95477 ASL-203ENST00000380839 1765 ntTSL 5 BASIC17.99■□□□□ 0.47
ABCA1O95477 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ABCA1O95477 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
ABCA1O95477 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ABCA1O95477 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC17.98■□□□□ 0.47
ABCA1O95477 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC17.98■□□□□ 0.47
ABCA1O95477 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.98■□□□□ 0.47
ABCA1O95477 AC068587.7-201ENST00000641602 218 ntBASIC17.98■□□□□ 0.47
ABCA1O95477 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ABCA1O95477 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ABCA1O95477 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ABCA1O95477 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC17.98■□□□□ 0.47
ABCA1O95477 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC17.98■□□□□ 0.47
ABCA1O95477 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ABCA1O95477 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
ABCA1O95477 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC17.98■□□□□ 0.47
ABCA1O95477 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC17.98■□□□□ 0.47
ABCA1O95477 AC231657.2-201ENST00000624556 255 ntBASIC17.98■□□□□ 0.47
ABCA1O95477 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ABCA1O95477 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
ABCA1O95477 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ABCA1O95477 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
ABCA1O95477 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC17.98■□□□□ 0.47
ABCA1O95477 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
ABCA1O95477 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
ABCA1O95477 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ABCA1O95477 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ABCA1O95477 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
ABCA1O95477 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ABCA1O95477 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ABCA1O95477 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC17.97■□□□□ 0.47
ABCA1O95477 AC098934.4-201ENST00000564127 592 ntBASIC17.97■□□□□ 0.47
ABCA1O95477 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ABCA1O95477 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
ABCA1O95477 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ABCA1O95477 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC17.97■□□□□ 0.47
ABCA1O95477 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
ABCA1O95477 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC17.96■□□□□ 0.47
ABCA1O95477 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC17.96■□□□□ 0.47
ABCA1O95477 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ABCA1O95477 TSPY6P-201ENST00000448518 926 ntBASIC17.96■□□□□ 0.47
ABCA1O95477 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC17.96■□□□□ 0.47
ABCA1O95477 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC17.96■□□□□ 0.47
ABCA1O95477 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
ABCA1O95477 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC17.96■□□□□ 0.47
ABCA1O95477 UBE2DNL-204ENST00000602536 740 ntBASIC17.96■□□□□ 0.47
ABCA1O95477 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
ABCA1O95477 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
ABCA1O95477 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ABCA1O95477 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
ABCA1O95477 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
ABCA1O95477 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
ABCA1O95477 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
ABCA1O95477 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ABCA1O95477 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC17.96■□□□□ 0.47
ABCA1O95477 AC007322.1-201ENST00000426983 750 ntBASIC17.96■□□□□ 0.47
ABCA1O95477 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.96■□□□□ 0.47
ABCA1O95477 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
ABCA1O95477 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC17.96■□□□□ 0.47
ABCA1O95477 TFG-210ENST00000620299 1289 ntTSL 5 BASIC17.96■□□□□ 0.47
ABCA1O95477 AC005224.4-201ENST00000583262 1652 ntBASIC17.96■□□□□ 0.46
ABCA1O95477 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ABCA1O95477 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC17.95■□□□□ 0.46
ABCA1O95477 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
ABCA1O95477 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
ABCA1O95477 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ABCA1O95477 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC17.95■□□□□ 0.46
ABCA1O95477 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC17.95■□□□□ 0.46
ABCA1O95477 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
ABCA1O95477 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ABCA1O95477 H19-210ENST00000439725 1929 ntTSL 2 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms