Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LDB3O75112 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LDB3O75112 AC092053.2-201ENST00000640557 1818 ntBASIC20.29■□□□□ 0.84
LDB3O75112 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
LDB3O75112 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LDB3O75112 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
LDB3O75112 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LDB3O75112 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LDB3O75112 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
LDB3O75112 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LDB3O75112 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LDB3O75112 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
LDB3O75112 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDB3O75112 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDB3O75112 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LDB3O75112 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDB3O75112 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.28■□□□□ 0.84
LDB3O75112 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
LDB3O75112 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDB3O75112 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LDB3O75112 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.28■□□□□ 0.84
LDB3O75112 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.28■□□□□ 0.84
LDB3O75112 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.28■□□□□ 0.84
LDB3O75112 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.28■□□□□ 0.84
LDB3O75112 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.28■□□□□ 0.84
LDB3O75112 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.28■□□□□ 0.84
LDB3O75112 MIR6084-201ENST00000622012 110 ntBASIC20.28■□□□□ 0.84
LDB3O75112 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDB3O75112 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDB3O75112 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.28■□□□□ 0.84
LDB3O75112 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDB3O75112 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.28■□□□□ 0.84
LDB3O75112 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LDB3O75112 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LDB3O75112 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.28■□□□□ 0.84
LDB3O75112 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LDB3O75112 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.27■□□□□ 0.84
LDB3O75112 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LDB3O75112 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LDB3O75112 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LDB3O75112 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.27■□□□□ 0.84
LDB3O75112 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LDB3O75112 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.27■□□□□ 0.84
LDB3O75112 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LDB3O75112 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LDB3O75112 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.27■□□□□ 0.83
LDB3O75112 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
LDB3O75112 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
LDB3O75112 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LDB3O75112 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LDB3O75112 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LDB3O75112 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LDB3O75112 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LDB3O75112 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.26■□□□□ 0.83
LDB3O75112 AP004607.7-201ENST00000527152 1677 ntBASIC20.26■□□□□ 0.83
LDB3O75112 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LDB3O75112 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
LDB3O75112 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LDB3O75112 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.26■□□□□ 0.83
LDB3O75112 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LDB3O75112 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LDB3O75112 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
LDB3O75112 AL358852.1-201ENST00000623174 1268 ntBASIC20.26■□□□□ 0.83
LDB3O75112 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LDB3O75112 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LDB3O75112 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDB3O75112 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDB3O75112 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDB3O75112 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.25■□□□□ 0.83
LDB3O75112 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDB3O75112 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.25■□□□□ 0.83
LDB3O75112 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.25■□□□□ 0.83
LDB3O75112 AL354811.1-201ENST00000610286 706 ntBASIC20.25■□□□□ 0.83
LDB3O75112 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.25■□□□□ 0.83
LDB3O75112 AC079834.2-201ENST00000609776 1949 ntBASIC20.25■□□□□ 0.83
LDB3O75112 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDB3O75112 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.24■□□□□ 0.83
LDB3O75112 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LDB3O75112 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LDB3O75112 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
LDB3O75112 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.24■□□□□ 0.83
LDB3O75112 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LDB3O75112 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.24■□□□□ 0.83
LDB3O75112 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
LDB3O75112 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.24■□□□□ 0.83
LDB3O75112 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.24■□□□□ 0.83
LDB3O75112 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.24■□□□□ 0.83
LDB3O75112 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDB3O75112 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDB3O75112 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.23■□□□□ 0.83
LDB3O75112 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LDB3O75112 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
LDB3O75112 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDB3O75112 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LDB3O75112 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDB3O75112 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.23■□□□□ 0.83
LDB3O75112 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LDB3O75112 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.23■□□□□ 0.83
LDB3O75112 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.23■□□□□ 0.83
LDB3O75112 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms