Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PROM1O43490 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
PROM1O43490 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
PROM1O43490 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PROM1O43490 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.44■□□□□ 0.86
PROM1O43490 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
PROM1O43490 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.43■□□□□ 0.86
PROM1O43490 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.43■□□□□ 0.86
PROM1O43490 TSPY26P-201ENST00000476365 1326 ntBASIC20.43■□□□□ 0.86
PROM1O43490 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.43■□□□□ 0.86
PROM1O43490 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
PROM1O43490 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PROM1O43490 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
PROM1O43490 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
PROM1O43490 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PROM1O43490 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PROM1O43490 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
PROM1O43490 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
PROM1O43490 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
PROM1O43490 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PROM1O43490 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
PROM1O43490 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PROM1O43490 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PROM1O43490 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
PROM1O43490 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.42■□□□□ 0.86
PROM1O43490 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
PROM1O43490 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.42■□□□□ 0.86
PROM1O43490 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PROM1O43490 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PROM1O43490 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.42■□□□□ 0.86
PROM1O43490 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PROM1O43490 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PROM1O43490 C11orf96-202ENST00000528572 1834 ntBASIC20.41■□□□□ 0.86
PROM1O43490 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PROM1O43490 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
PROM1O43490 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PROM1O43490 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PROM1O43490 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
PROM1O43490 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.41■□□□□ 0.86
PROM1O43490 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PROM1O43490 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.41■□□□□ 0.86
PROM1O43490 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PROM1O43490 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PROM1O43490 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.41■□□□□ 0.86
PROM1O43490 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.41■□□□□ 0.86
PROM1O43490 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
PROM1O43490 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PROM1O43490 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PROM1O43490 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
PROM1O43490 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PROM1O43490 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PROM1O43490 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
PROM1O43490 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PROM1O43490 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.4■□□□□ 0.86
PROM1O43490 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
PROM1O43490 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.4■□□□□ 0.86
PROM1O43490 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.4■□□□□ 0.86
PROM1O43490 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.4■□□□□ 0.86
PROM1O43490 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.4■□□□□ 0.86
PROM1O43490 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
PROM1O43490 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PROM1O43490 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PROM1O43490 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PROM1O43490 LINC00565-201ENST00000562710 2331 ntBASIC20.39■□□□□ 0.86
PROM1O43490 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PROM1O43490 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.39■□□□□ 0.86
PROM1O43490 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PROM1O43490 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PROM1O43490 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
PROM1O43490 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PROM1O43490 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
PROM1O43490 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PROM1O43490 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.39■□□□□ 0.85
PROM1O43490 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.39■□□□□ 0.85
PROM1O43490 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
PROM1O43490 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PROM1O43490 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PROM1O43490 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PROM1O43490 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PROM1O43490 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PROM1O43490 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PROM1O43490 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.38■□□□□ 0.85
PROM1O43490 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PROM1O43490 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PROM1O43490 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PROM1O43490 AL024507.2-201ENST00000606070 2574 ntBASIC20.38■□□□□ 0.85
PROM1O43490 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.38■□□□□ 0.85
PROM1O43490 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.38■□□□□ 0.85
PROM1O43490 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.38■□□□□ 0.85
PROM1O43490 SMUG1P1-201ENST00000590640 811 ntBASIC20.38■□□□□ 0.85
PROM1O43490 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.38■□□□□ 0.85
PROM1O43490 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PROM1O43490 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.38■□□□□ 0.85
PROM1O43490 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PROM1O43490 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PROM1O43490 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PROM1O43490 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.37■□□□□ 0.85
PROM1O43490 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.37■□□□□ 0.85
PROM1O43490 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PROM1O43490 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms