Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 METTL26-203ENST00000397664 604 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXA3O43365 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXA3O43365 PPP1R14BP3-201ENST00000509033 445 ntBASIC17.32■□□□□ 0.36
HOXA3O43365 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC17.32■□□□□ 0.36
HOXA3O43365 AC104187.1-201ENST00000607510 612 ntBASIC17.32■□□□□ 0.36
HOXA3O43365 LINC01960-201ENST00000563759 1884 ntBASIC17.32■□□□□ 0.36
HOXA3O43365 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXA3O43365 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXA3O43365 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HOXA3O43365 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXA3O43365 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HOXA3O43365 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
HOXA3O43365 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXA3O43365 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
HOXA3O43365 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC17.31■□□□□ 0.36
HOXA3O43365 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC17.31■□□□□ 0.36
HOXA3O43365 PXK-203ENST00000383715 1756 ntTSL 5 BASIC17.31■□□□□ 0.36
HOXA3O43365 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXA3O43365 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC17.31■□□□□ 0.36
HOXA3O43365 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXA3O43365 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC17.31■□□□□ 0.36
HOXA3O43365 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC17.31■□□□□ 0.36
HOXA3O43365 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC17.31■□□□□ 0.36
HOXA3O43365 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HOXA3O43365 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
HOXA3O43365 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXA3O43365 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
HOXA3O43365 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXA3O43365 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
HOXA3O43365 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HOXA3O43365 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HOXA3O43365 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
HOXA3O43365 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC17.3■□□□□ 0.36
HOXA3O43365 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HOXA3O43365 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC17.3■□□□□ 0.36
HOXA3O43365 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC17.3■□□□□ 0.36
HOXA3O43365 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC17.3■□□□□ 0.36
HOXA3O43365 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HOXA3O43365 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC17.3■□□□□ 0.36
HOXA3O43365 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC17.3■□□□□ 0.36
HOXA3O43365 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC17.3■□□□□ 0.36
HOXA3O43365 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
HOXA3O43365 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HOXA3O43365 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
HOXA3O43365 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXA3O43365 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC17.29■□□□□ 0.36
HOXA3O43365 CROCCP5-201ENST00000436658 830 ntBASIC17.29■□□□□ 0.36
HOXA3O43365 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC17.29■□□□□ 0.36
HOXA3O43365 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC17.29■□□□□ 0.36
HOXA3O43365 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC17.29■□□□□ 0.36
HOXA3O43365 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC17.29■□□□□ 0.36
HOXA3O43365 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXA3O43365 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HOXA3O43365 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
HOXA3O43365 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC17.29■□□□□ 0.36
HOXA3O43365 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXA3O43365 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXA3O43365 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXA3O43365 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HOXA3O43365 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXA3O43365 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXA3O43365 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXA3O43365 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXA3O43365 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HOXA3O43365 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
HOXA3O43365 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC17.28■□□□□ 0.36
HOXA3O43365 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HOXA3O43365 MDK-213ENST00000617138 635 ntTSL 2 BASIC17.28■□□□□ 0.36
HOXA3O43365 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC17.28■□□□□ 0.36
HOXA3O43365 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC17.28■□□□□ 0.36
HOXA3O43365 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HOXA3O43365 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HOXA3O43365 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HOXA3O43365 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HOXA3O43365 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC17.27■□□□□ 0.36
HOXA3O43365 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HOXA3O43365 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HOXA3O43365 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HOXA3O43365 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC17.27■□□□□ 0.36
HOXA3O43365 MIR663A-201ENST00000385250 93 ntBASIC17.27■□□□□ 0.36
HOXA3O43365 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC17.27■□□□□ 0.36
HOXA3O43365 MAP2K4P1-201ENST00000438453 1195 ntBASIC17.27■□□□□ 0.36
HOXA3O43365 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC17.27■□□□□ 0.36
HOXA3O43365 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HOXA3O43365 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC17.27■□□□□ 0.36
HOXA3O43365 AC079089.2-201ENST00000531211 1277 ntBASIC17.27■□□□□ 0.36
HOXA3O43365 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC17.27■□□□□ 0.36
HOXA3O43365 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC17.27■□□□□ 0.36
HOXA3O43365 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC17.27■□□□□ 0.36
HOXA3O43365 AC104771.1-201ENST00000603335 964 ntBASIC17.27■□□□□ 0.36
HOXA3O43365 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
HOXA3O43365 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
HOXA3O43365 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HOXA3O43365 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HOXA3O43365 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HOXA3O43365 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HOXA3O43365 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC17.26■□□□□ 0.35
HOXA3O43365 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC17.26■□□□□ 0.35
HOXA3O43365 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HOXA3O43365 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms