Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
TRIM49D1C9J1S8 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.56■■□□□ 1.04
TRIM49D1C9J1S8 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.56■■□□□ 1.04
TRIM49D1C9J1S8 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
TRIM49D1C9J1S8 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.56■■□□□ 1.04
TRIM49D1C9J1S8 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.56■■□□□ 1.04
TRIM49D1C9J1S8 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
TRIM49D1C9J1S8 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM49D1C9J1S8 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM49D1C9J1S8 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.56■■□□□ 1.04
TRIM49D1C9J1S8 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM49D1C9J1S8 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 AC079089.2-201ENST00000531211 1277 ntBASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 AL117332.1-201ENST00000622628 974 ntBASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRIM49D1C9J1S8 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRIM49D1C9J1S8 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRIM49D1C9J1S8 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.54■■□□□ 1.04
TRIM49D1C9J1S8 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
TRIM49D1C9J1S8 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
TRIM49D1C9J1S8 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
TRIM49D1C9J1S8 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
TRIM49D1C9J1S8 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRIM49D1C9J1S8 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRIM49D1C9J1S8 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRIM49D1C9J1S8 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.54■■□□□ 1.04
TRIM49D1C9J1S8 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRIM49D1C9J1S8 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRIM49D1C9J1S8 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TRIM49D1C9J1S8 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRIM49D1C9J1S8 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.53■■□□□ 1.04
TRIM49D1C9J1S8 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TRIM49D1C9J1S8 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.53■■□□□ 1.04
TRIM49D1C9J1S8 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRIM49D1C9J1S8 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TRIM49D1C9J1S8 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRIM49D1C9J1S8 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.53■■□□□ 1.04
TRIM49D1C9J1S8 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.53■■□□□ 1.04
TRIM49D1C9J1S8 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
TRIM49D1C9J1S8 AL451085.2-201ENST00000605085 799 ntBASIC21.53■■□□□ 1.04
TRIM49D1C9J1S8 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.53■■□□□ 1.04
TRIM49D1C9J1S8 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.53■■□□□ 1.04
TRIM49D1C9J1S8 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRIM49D1C9J1S8 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
TRIM49D1C9J1S8 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRIM49D1C9J1S8 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
TRIM49D1C9J1S8 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
TRIM49D1C9J1S8 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRIM49D1C9J1S8 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.52■■□□□ 1.04
TRIM49D1C9J1S8 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
TRIM49D1C9J1S8 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.52■■□□□ 1.04
TRIM49D1C9J1S8 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
TRIM49D1C9J1S8 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRIM49D1C9J1S8 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TRIM49D1C9J1S8 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
TRIM49D1C9J1S8 AC133637.1-201ENST00000624115 1537 ntBASIC21.51■■□□□ 1.03
TRIM49D1C9J1S8 SLC25A24-204ENST00000569674 2357 ntBASIC21.51■■□□□ 1.03
TRIM49D1C9J1S8 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TRIM49D1C9J1S8 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TRIM49D1C9J1S8 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRIM49D1C9J1S8 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.51■■□□□ 1.03
TRIM49D1C9J1S8 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.51■■□□□ 1.03
TRIM49D1C9J1S8 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
TRIM49D1C9J1S8 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.51■■□□□ 1.03
TRIM49D1C9J1S8 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TRIM49D1C9J1S8 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRIM49D1C9J1S8 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TRIM49D1C9J1S8 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
TRIM49D1C9J1S8 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
TRIM49D1C9J1S8 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM49D1C9J1S8 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM49D1C9J1S8 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.5■■□□□ 1.03
TRIM49D1C9J1S8 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM49D1C9J1S8 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
TRIM49D1C9J1S8 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
TRIM49D1C9J1S8 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.5■■□□□ 1.03
TRIM49D1C9J1S8 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM49D1C9J1S8 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.5■■□□□ 1.03
TRIM49D1C9J1S8 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.5■■□□□ 1.03
TRIM49D1C9J1S8 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM49D1C9J1S8 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms