Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC17.02■□□□□ 0.31
COL6A5A8TX70 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC17.02■□□□□ 0.31
COL6A5A8TX70 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL6A5A8TX70 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL6A5A8TX70 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A5A8TX70 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A5A8TX70 C1QBPP2-201ENST00000528754 825 ntBASIC17.01■□□□□ 0.31
COL6A5A8TX70 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.01■□□□□ 0.31
COL6A5A8TX70 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A5A8TX70 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC17.01■□□□□ 0.31
COL6A5A8TX70 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.01■□□□□ 0.31
COL6A5A8TX70 AC092803.2-201ENST00000564287 1899 ntBASIC17.01■□□□□ 0.31
COL6A5A8TX70 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.01■□□□□ 0.31
COL6A5A8TX70 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
COL6A5A8TX70 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A5A8TX70 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC17.01■□□□□ 0.31
COL6A5A8TX70 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL6A5A8TX70 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A5A8TX70 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL6A5A8TX70 SERP1-208ENST00000491660 830 ntTSL 2 BASIC17■□□□□ 0.31
COL6A5A8TX70 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17■□□□□ 0.31
COL6A5A8TX70 FAM197Y4-202ENST00000622692 608 ntBASIC17■□□□□ 0.31
COL6A5A8TX70 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A5A8TX70 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC17■□□□□ 0.31
COL6A5A8TX70 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A5A8TX70 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17■□□□□ 0.31
COL6A5A8TX70 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17■□□□□ 0.31
COL6A5A8TX70 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC17■□□□□ 0.31
COL6A5A8TX70 AC008403.3-201ENST00000598924 454 ntBASIC17■□□□□ 0.31
COL6A5A8TX70 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL6A5A8TX70 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC17■□□□□ 0.31
COL6A5A8TX70 AC009237.3-201ENST00000393279 1427 ntBASIC17■□□□□ 0.31
COL6A5A8TX70 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
COL6A5A8TX70 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17■□□□□ 0.31
COL6A5A8TX70 GATS-209ENST00000454084 1030 ntTSL 3 BASIC17■□□□□ 0.31
COL6A5A8TX70 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17■□□□□ 0.31
COL6A5A8TX70 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL6A5A8TX70 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
COL6A5A8TX70 PXK-203ENST00000383715 1756 ntTSL 5 BASIC16.99■□□□□ 0.31
COL6A5A8TX70 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
COL6A5A8TX70 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A5A8TX70 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC16.99■□□□□ 0.31
COL6A5A8TX70 CD177P1-201ENST00000606252 935 ntBASIC16.99■□□□□ 0.31
COL6A5A8TX70 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A5A8TX70 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC16.99■□□□□ 0.31
COL6A5A8TX70 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A5A8TX70 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL6A5A8TX70 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
COL6A5A8TX70 SPIB-206ENST00000596074 847 ntTSL 2 BASIC16.99■□□□□ 0.31
COL6A5A8TX70 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL6A5A8TX70 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL6A5A8TX70 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL6A5A8TX70 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL6A5A8TX70 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
COL6A5A8TX70 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC16.98■□□□□ 0.31
COL6A5A8TX70 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL6A5A8TX70 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC16.98■□□□□ 0.31
COL6A5A8TX70 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC16.98■□□□□ 0.31
COL6A5A8TX70 AC055733.4-201ENST00000638462 1354 ntBASIC16.98■□□□□ 0.31
COL6A5A8TX70 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL6A5A8TX70 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL6A5A8TX70 KRT18P20-201ENST00000548986 1279 ntBASIC16.98■□□□□ 0.31
COL6A5A8TX70 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL6A5A8TX70 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL6A5A8TX70 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL6A5A8TX70 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL6A5A8TX70 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL6A5A8TX70 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.97■□□□□ 0.31
COL6A5A8TX70 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.97■□□□□ 0.31
COL6A5A8TX70 AL162412.1-201ENST00000567129 965 ntBASIC16.97■□□□□ 0.31
COL6A5A8TX70 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
COL6A5A8TX70 AC069236.1-201ENST00000604339 616 ntBASIC16.97■□□□□ 0.31
COL6A5A8TX70 AC092865.7-201ENST00000641832 219 ntBASIC16.97■□□□□ 0.31
COL6A5A8TX70 AC004687.1-201ENST00000579003 1625 ntBASIC16.97■□□□□ 0.31
COL6A5A8TX70 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
COL6A5A8TX70 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
COL6A5A8TX70 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
COL6A5A8TX70 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL6A5A8TX70 KRT17P2-201ENST00000300992 1314 ntBASIC16.97■□□□□ 0.31
COL6A5A8TX70 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC16.97■□□□□ 0.31
COL6A5A8TX70 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL6A5A8TX70 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
COL6A5A8TX70 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A5A8TX70 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A5A8TX70 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A5A8TX70 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC16.96■□□□□ 0.31
COL6A5A8TX70 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A5A8TX70 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A5A8TX70 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.96■□□□□ 0.31
COL6A5A8TX70 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC16.96■□□□□ 0.31
COL6A5A8TX70 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC16.96■□□□□ 0.31
COL6A5A8TX70 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC16.96■□□□□ 0.31
COL6A5A8TX70 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
COL6A5A8TX70 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A5A8TX70 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
COL6A5A8TX70 CEBPA-AS1-201ENST00000592982 2198 ntBASIC16.96■□□□□ 0.31
COL6A5A8TX70 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A5A8TX70 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.31
COL6A5A8TX70 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC16.96■□□□□ 0.3
COL6A5A8TX70 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms