Protein–RNA interactions for Protein: A6NCK2

TRIM43B, Tripartite motif-containing protein 43B, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43BA6NCK2 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
TRIM43BA6NCK2 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
TRIM43BA6NCK2 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
TRIM43BA6NCK2 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
TRIM43BA6NCK2 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
TRIM43BA6NCK2 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC23.73■■□□□ 1.39
TRIM43BA6NCK2 ESRRAP1-201ENST00000400596 1257 ntBASIC23.73■■□□□ 1.39
TRIM43BA6NCK2 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC23.73■■□□□ 1.39
TRIM43BA6NCK2 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC23.73■■□□□ 1.39
TRIM43BA6NCK2 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
TRIM43BA6NCK2 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
TRIM43BA6NCK2 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
TRIM43BA6NCK2 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
TRIM43BA6NCK2 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC23.72■■□□□ 1.39
TRIM43BA6NCK2 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC23.72■■□□□ 1.39
TRIM43BA6NCK2 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC23.72■■□□□ 1.39
TRIM43BA6NCK2 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
TRIM43BA6NCK2 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
TRIM43BA6NCK2 CASP6-205ENST00000505486 538 ntTSL 4 BASIC23.72■■□□□ 1.39
TRIM43BA6NCK2 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC23.72■■□□□ 1.39
TRIM43BA6NCK2 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC23.72■■□□□ 1.39
TRIM43BA6NCK2 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC23.72■■□□□ 1.39
TRIM43BA6NCK2 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
TRIM43BA6NCK2 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC23.72■■□□□ 1.39
TRIM43BA6NCK2 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
TRIM43BA6NCK2 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC23.72■■□□□ 1.39
TRIM43BA6NCK2 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
TRIM43BA6NCK2 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
TRIM43BA6NCK2 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
TRIM43BA6NCK2 AC138932.3-201ENST00000567634 1902 ntBASIC23.72■■□□□ 1.39
TRIM43BA6NCK2 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
TRIM43BA6NCK2 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC23.71■■□□□ 1.39
TRIM43BA6NCK2 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.71■■□□□ 1.39
TRIM43BA6NCK2 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC23.71■■□□□ 1.39
TRIM43BA6NCK2 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
TRIM43BA6NCK2 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
TRIM43BA6NCK2 LINC00543-201ENST00000567234 1845 ntBASIC23.71■■□□□ 1.39
TRIM43BA6NCK2 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
TRIM43BA6NCK2 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC23.71■■□□□ 1.39
TRIM43BA6NCK2 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
TRIM43BA6NCK2 AL158047.1-201ENST00000445918 881 ntBASIC23.71■■□□□ 1.39
TRIM43BA6NCK2 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC23.71■■□□□ 1.39
TRIM43BA6NCK2 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC23.71■■□□□ 1.39
TRIM43BA6NCK2 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC23.71■■□□□ 1.39
TRIM43BA6NCK2 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC23.71■■□□□ 1.39
TRIM43BA6NCK2 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.71■■□□□ 1.39
TRIM43BA6NCK2 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.39
TRIM43BA6NCK2 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.39
TRIM43BA6NCK2 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
TRIM43BA6NCK2 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
TRIM43BA6NCK2 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC23.7■■□□□ 1.38
TRIM43BA6NCK2 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
TRIM43BA6NCK2 BET1L-204ENST00000410108 637 ntTSL 3 BASIC23.7■■□□□ 1.38
TRIM43BA6NCK2 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC23.7■■□□□ 1.38
TRIM43BA6NCK2 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
TRIM43BA6NCK2 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
TRIM43BA6NCK2 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC23.7■■□□□ 1.38
TRIM43BA6NCK2 IRX5-204ENST00000560154 879 ntTSL 5 BASIC23.7■■□□□ 1.38
TRIM43BA6NCK2 PLLP-204ENST00000569059 665 ntTSL 3 BASIC23.7■■□□□ 1.38
TRIM43BA6NCK2 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
TRIM43BA6NCK2 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC23.7■■□□□ 1.38
TRIM43BA6NCK2 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
TRIM43BA6NCK2 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
TRIM43BA6NCK2 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
TRIM43BA6NCK2 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
TRIM43BA6NCK2 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC23.69■■□□□ 1.38
TRIM43BA6NCK2 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC23.69■■□□□ 1.38
TRIM43BA6NCK2 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC23.69■■□□□ 1.38
TRIM43BA6NCK2 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
TRIM43BA6NCK2 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TRIM43BA6NCK2 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.69■■□□□ 1.38
TRIM43BA6NCK2 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC23.69■■□□□ 1.38
TRIM43BA6NCK2 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC23.69■■□□□ 1.38
TRIM43BA6NCK2 RPS2P4-201ENST00000476944 856 ntBASIC23.69■■□□□ 1.38
TRIM43BA6NCK2 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC23.69■■□□□ 1.38
TRIM43BA6NCK2 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
TRIM43BA6NCK2 OR10C1-204ENST00000622521 1039 ntBASIC23.69■■□□□ 1.38
TRIM43BA6NCK2 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
TRIM43BA6NCK2 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
TRIM43BA6NCK2 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC23.69■■□□□ 1.38
TRIM43BA6NCK2 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
TRIM43BA6NCK2 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
TRIM43BA6NCK2 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
TRIM43BA6NCK2 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
TRIM43BA6NCK2 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
TRIM43BA6NCK2 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
TRIM43BA6NCK2 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
TRIM43BA6NCK2 CREM-210ENST00000374721 2020 ntTSL 5 BASIC23.68■■□□□ 1.38
TRIM43BA6NCK2 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC23.68■■□□□ 1.38
TRIM43BA6NCK2 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC23.68■■□□□ 1.38
TRIM43BA6NCK2 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC23.68■■□□□ 1.38
TRIM43BA6NCK2 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC23.68■■□□□ 1.38
TRIM43BA6NCK2 AC142381.4-202ENST00000563973 229 ntBASIC23.68■■□□□ 1.38
TRIM43BA6NCK2 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
TRIM43BA6NCK2 AC016405.3-201ENST00000607710 860 ntBASIC23.68■■□□□ 1.38
TRIM43BA6NCK2 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC23.68■■□□□ 1.38
TRIM43BA6NCK2 MYC-209ENST00000641252 345 ntBASIC23.68■■□□□ 1.38
TRIM43BA6NCK2 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
TRIM43BA6NCK2 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
TRIM43BA6NCK2 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms