Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TRAV3A0A0B4J244 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV3A0A0B4J244 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV3A0A0B4J244 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
TRAV3A0A0B4J244 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV3A0A0B4J244 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC17.34■□□□□ 0.37
TRAV3A0A0B4J244 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV3A0A0B4J244 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV3A0A0B4J244 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV3A0A0B4J244 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV3A0A0B4J244 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
TRAV3A0A0B4J244 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC17.34■□□□□ 0.37
TRAV3A0A0B4J244 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC17.34■□□□□ 0.37
TRAV3A0A0B4J244 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV3A0A0B4J244 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV3A0A0B4J244 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
TRAV3A0A0B4J244 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC17.33■□□□□ 0.37
TRAV3A0A0B4J244 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC17.33■□□□□ 0.37
TRAV3A0A0B4J244 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
TRAV3A0A0B4J244 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
TRAV3A0A0B4J244 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV3A0A0B4J244 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV3A0A0B4J244 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV3A0A0B4J244 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV3A0A0B4J244 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV3A0A0B4J244 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV3A0A0B4J244 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV3A0A0B4J244 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC17.32■□□□□ 0.36
TRAV3A0A0B4J244 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV3A0A0B4J244 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV3A0A0B4J244 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV3A0A0B4J244 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV3A0A0B4J244 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAV3A0A0B4J244 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
TRAV3A0A0B4J244 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV3A0A0B4J244 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAV3A0A0B4J244 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAV3A0A0B4J244 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC17.32■□□□□ 0.36
TRAV3A0A0B4J244 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV3A0A0B4J244 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV3A0A0B4J244 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV3A0A0B4J244 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
TRAV3A0A0B4J244 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV3A0A0B4J244 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV3A0A0B4J244 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV3A0A0B4J244 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV3A0A0B4J244 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
TRAV3A0A0B4J244 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC17.31■□□□□ 0.36
TRAV3A0A0B4J244 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV3A0A0B4J244 Z98882.1-201ENST00000622160 2253 ntBASIC17.31■□□□□ 0.36
TRAV3A0A0B4J244 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV3A0A0B4J244 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV3A0A0B4J244 AC010525.1-201ENST00000585559 441 ntBASIC17.31■□□□□ 0.36
TRAV3A0A0B4J244 TRIR-205ENST00000592273 783 ntTSL 3 BASIC17.31■□□□□ 0.36
TRAV3A0A0B4J244 AL512631.2-201ENST00000604634 923 ntBASIC17.31■□□□□ 0.36
TRAV3A0A0B4J244 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
TRAV3A0A0B4J244 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC17.31■□□□□ 0.36
TRAV3A0A0B4J244 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV3A0A0B4J244 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV3A0A0B4J244 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV3A0A0B4J244 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
TRAV3A0A0B4J244 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV3A0A0B4J244 OR7E47P-201ENST00000546390 1422 ntBASIC17.3■□□□□ 0.36
TRAV3A0A0B4J244 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV3A0A0B4J244 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC17.3■□□□□ 0.36
TRAV3A0A0B4J244 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV3A0A0B4J244 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
TRAV3A0A0B4J244 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV3A0A0B4J244 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV3A0A0B4J244 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV3A0A0B4J244 SRD5A1P1-201ENST00000442297 786 ntBASIC17.3■□□□□ 0.36
TRAV3A0A0B4J244 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
TRAV3A0A0B4J244 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC17.3■□□□□ 0.36
TRAV3A0A0B4J244 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TRAV3A0A0B4J244 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV3A0A0B4J244 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV3A0A0B4J244 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV3A0A0B4J244 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV3A0A0B4J244 AF106564.1-201ENST00000607058 2553 ntBASIC17.3■□□□□ 0.36
TRAV3A0A0B4J244 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV3A0A0B4J244 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV3A0A0B4J244 RBM38-205ENST00000440234 686 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAV3A0A0B4J244 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV3A0A0B4J244 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV3A0A0B4J244 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAV3A0A0B4J244 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC17.29■□□□□ 0.36
TRAV3A0A0B4J244 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAV3A0A0B4J244 AL024507.2-201ENST00000606070 2574 ntBASIC17.29■□□□□ 0.36
TRAV3A0A0B4J244 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 TUB-203ENST00000534099 1759 ntTSL 2 BASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV3A0A0B4J244 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms