Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 PTBP2-203ENST00000426398 3027 ntAPPRIS P3 TSL 1 (best) BASIC8.12□□□□□ -1.112e-6■■■■■ 36.9
SF3B1O75533 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.54□□□□□ -1.842e-6■■■■■ 36.9
SF3B1O75533 MAP4-208ENST00000429422 3724 ntTSL 1 (best)11.4□□□□□ -0.592e-6■■■■■ 36.9
SF3B1O75533 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC21.02■□□□□ 0.961e-6■■■■■ 36.9
SF3B1O75533 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.41e-6■■■■■ 36.9
SF3B1O75533 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.08■□□□□ 0.331e-6■■■■■ 36.9
SF3B1O75533 RTL10-205ENST00000484072 1385 ntTSL 214.7□□□□□ -0.063e-6■■■■■ 36.8
SF3B1O75533 RTL10-202ENST00000405640 6785 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.323e-6■■■■■ 36.8
SF3B1O75533 RTL10-201ENST00000328554 6619 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.373e-6■■■■■ 36.8
SF3B1O75533 RTL10-203ENST00000407472 6523 ntAPPRIS P2 TSL 1 (best) BASIC10.64□□□□□ -0.713e-6■■■■■ 36.8
SF3B1O75533 LRRC8D-206ENST00000527156 922 ntTSL 212.64□□□□□ -0.395e-6■■■■■ 36.8
SF3B1O75533 LRRC8D-204ENST00000441269 905 ntTSL 33.11□□□□□ -1.915e-6■■■■■ 36.8
SF3B1O75533 RCL1-203ENST00000381732 804 ntTSL 2 BASIC12.6□□□□□ -0.393e-6■■■■■ 36.8
SF3B1O75533 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.743e-7■■■■■ 36.8
SF3B1O75533 PSMG1-203ENST00000411828 959 ntTSL 321.68■■□□□ 1.063e-7■■■■■ 36.8
SF3B1O75533 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC21.55■■□□□ 1.043e-7■■■■■ 36.8
SF3B1O75533 PSMG1-204ENST00000431628 760 ntTSL 1 (best)18.81■□□□□ 0.63e-7■■■■■ 36.8
SF3B1O75533 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.4■□□□□ 0.863e-6■■■■■ 36.8
SF3B1O75533 DENND4B-205ENST00000472932 541 ntTSL 519.91■□□□□ 0.783e-6■■■■■ 36.8
SF3B1O75533 PIEZO1-208ENST00000484567 2464 ntTSL 218.3■□□□□ 0.523e-6■■■■■ 36.8
SF3B1O75533 HSPA9-206ENST00000506477 664 ntTSL 218.13■□□□□ 0.491e-7■■■■■ 36.8
SF3B1O75533 PIEZO1-205ENST00000472168 663 ntTSL 217.05■□□□□ 0.323e-6■■■■■ 36.8
SF3B1O75533 ACVR1-206ENST00000424669 550 ntTSL 415□□□□□ -0.018e-12■■■■■ 36.8
SF3B1O75533 ACVR1-210ENST00000539637 564 ntTSL 412.19□□□□□ -0.468e-12■■■■■ 36.8
SF3B1O75533 LINC01446-201ENST00000380970 3484 ntTSL 2 BASIC11.78□□□□□ -0.521e-7■■■■■ 36.8
SF3B1O75533 HSPA9-209ENST00000507886 551 ntTSL 310.07□□□□□ -0.81e-7■■■■■ 36.8
SF3B1O75533 ACVR1-208ENST00000440523 534 ntTSL 39.36□□□□□ -0.918e-12■■■■■ 36.8
SF3B1O75533 ACVR1-205ENST00000413751 536 ntTSL 46.66□□□□□ -1.348e-12■■■■■ 36.8
SF3B1O75533 ZCCHC8-207ENST00000543897 5663 ntTSL 1 (best) BASIC14.34□□□□□ -0.113e-6■■■■■ 36.8
SF3B1O75533 TMBIM6-222ENST00000550445 761 ntTSL 313.26□□□□□ -0.291e-8■■■■■ 36.8
SF3B1O75533 TMBIM6-218ENST00000549445 759 ntTSL 312.63□□□□□ -0.391e-8■■■■■ 36.8
SF3B1O75533 TMBIM6-208ENST00000547187 669 ntTSL 512□□□□□ -0.491e-8■■■■■ 36.8
SF3B1O75533 ZCCHC8-210ENST00000633063 2955 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.643e-6■■■■■ 36.8
SF3B1O75533 TMBIM6-216ENST00000549130 446 ntTSL 59.17□□□□□ -0.941e-8■■■■■ 36.8
SF3B1O75533 TMBIM6-228ENST00000553022 540 ntTSL 29.17□□□□□ -0.941e-8■■■■■ 36.8
SF3B1O75533 TMBIM6-211ENST00000548201 582 ntTSL 48.97□□□□□ -0.971e-8■■■■■ 36.8
SF3B1O75533 TMBIM6-220ENST00000549966 538 ntTSL 58.94□□□□□ -0.981e-8■■■■■ 36.8
SF3B1O75533 TMBIM6-204ENST00000546796 556 ntTSL 57.87□□□□□ -1.151e-8■■■■■ 36.8
SF3B1O75533 TMBIM6-206ENST00000546914 521 ntTSL 47.7□□□□□ -1.181e-8■■■■■ 36.8
SF3B1O75533 TMBIM6-210ENST00000547832 640 ntTSL 37.57□□□□□ -1.21e-8■■■■■ 36.8
SF3B1O75533 TMBIM6-226ENST00000552635 574 ntTSL 47.35□□□□□ -1.231e-8■■■■■ 36.8
SF3B1O75533 UBR1-208ENST00000569066 2250 ntTSL 1 (best)4.68□□□□□ -1.661e-6■■■■■ 36.8
SF3B1O75533 GPCPD1-205ENST00000481038 6649 ntTSL 24.59□□□□□ -1.672e-6■■■■■ 36.7
SF3B1O75533 RPL36A-205ENST00000465744 710 ntTSL 1 (best)13.15□□□□□ -0.34e-6■■■■■ 36.7
SF3B1O75533 RPL36A-HNRNPH2-202ENST00000409338 572 ntTSL 4 BASIC11.33□□□□□ -0.64e-6■■■■■ 36.7
SF3B1O75533 RPL36A-203ENST00000427805 910 ntTSL 1 (best) BASIC10.88□□□□□ -0.674e-6■■■■■ 36.7
SF3B1O75533 RPL36A-HNRNPH2-201ENST00000409170 562 ntAPPRIS P1 TSL 4 BASIC9.57□□□□□ -0.884e-6■■■■■ 36.7
SF3B1O75533 RPL36A-202ENST00000392994 691 ntTSL 2 BASIC8.48□□□□□ -1.054e-6■■■■■ 36.7
SF3B1O75533 RPL36A-201ENST00000372849 433 ntTSL 58.21□□□□□ -1.14e-6■■■■■ 36.7
SF3B1O75533 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.334e-6■■■■■ 36.7
SF3B1O75533 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.42□□□□□ -1.864e-6■■■■■ 36.7
SF3B1O75533 TIAL1-202ENST00000369087 1566 ntTSL 25.98□□□□□ -1.458e-7■■■■■ 36.7
SF3B1O75533 NMU-204ENST00000509371 283 ntTSL 1 (best)2.44□□□□□ -2.027e-7■■■■■ 36.7
SF3B1O75533 MAN2A2-202ENST00000557865 2671 ntTSL 213.88□□□□□ -0.196e-7■■■■■ 36.7
SF3B1O75533 MICU1-206ENST00000489666 579 ntTSL 49.08□□□□□ -0.961e-6■■■■■ 36.7
SF3B1O75533 EPB41-211ENST00000488277 262 ntTSL 31.82□□□□□ -2.129e-7■■■■■ 36.6
SF3B1O75533 SS18L1-203ENST00000450482 781 ntTSL 512.88□□□□□ -0.351e-6■■■■■ 36.6
SF3B1O75533 ELP2-225ENST00000544267 553 ntTSL 415.54■□□□□ 0.088e-8■■■■■ 36.6
SF3B1O75533 ELP2-228ENST00000545632 569 ntTSL 414.27□□□□□ -0.128e-8■■■■■ 36.6
SF3B1O75533 ELP2-220ENST00000542430 649 ntTSL 512.78□□□□□ -0.368e-8■■■■■ 36.6
SF3B1O75533 ELP2-222ENST00000543127 535 ntTSL 47.52□□□□□ -1.218e-8■■■■■ 36.6
SF3B1O75533 RACGAP1-224ENST00000551876 539 ntTSL 411.05□□□□□ -0.644e-6■■■■■ 36.6
SF3B1O75533 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.234e-6■■■■■ 36.6
SF3B1O75533 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC15.22■□□□□ 0.032e-6■■■■■ 36.5
SF3B1O75533 SREBF1-209ENST00000470247 374 ntTSL 512.02□□□□□ -0.492e-7■■■■■ 36.5
SF3B1O75533 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.411e-6■■■■■ 36.5
SF3B1O75533 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.01■□□□□ 0.311e-6■■■■■ 36.5
SF3B1O75533 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC16.27■□□□□ 0.191e-6■■■■■ 36.5
SF3B1O75533 MPP1-208ENST00000439370 2066 ntTSL 513.21□□□□□ -0.291e-6■■■■■ 36.5
SF3B1O75533 TBL1XR1-232ENST00000637544 214 ntTSL 52.61□□□□□ -1.992e-6■■■■■ 36.5
SF3B1O75533 TBL1XR1-216ENST00000491623 582 ntTSL 51.93□□□□□ -2.12e-6■■■■■ 36.5
SF3B1O75533 HMBS-215ENST00000542822 936 ntTSL 521.32■■□□□ 13e-6■■■■■ 36.4
SF3B1O75533 HMBS-225ENST00000546302 707 ntTSL 517.4■□□□□ 0.383e-6■■■■■ 36.4
SF3B1O75533 HMBS-205ENST00000535253 755 ntTSL 413.17□□□□□ -0.33e-6■■■■■ 36.4
SF3B1O75533 HMBS-211ENST00000539986 1155 ntTSL 313.17□□□□□ -0.33e-6■■■■■ 36.4
SF3B1O75533 HMBS-220ENST00000544360 695 ntTSL 313.17□□□□□ -0.33e-6■■■■■ 36.4
SF3B1O75533 HMBS-206ENST00000535793 832 ntTSL 59.61□□□□□ -0.873e-6■■■■■ 36.4
SF3B1O75533 HMBS-213ENST00000542345 882 ntTSL 37.85□□□□□ -1.153e-6■■■■■ 36.4
SF3B1O75533 HMBS-204ENST00000534956 547 ntTSL 55.92□□□□□ -1.463e-6■■■■■ 36.4
SF3B1O75533 GABRE-209ENST00000486255 6176 ntTSL 1 (best)9.03□□□□□ -0.966e-7■■■■■ 36.4
SF3B1O75533 PPDPF-204ENST00000473620 478 ntTSL 220.87■□□□□ 0.932e-6■■■■■ 36.4
SF3B1O75533 PPDPF-203ENST00000464438 373 ntTSL 220.34■□□□□ 0.852e-6■■■■■ 36.4
SF3B1O75533 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.81■□□□□ 0.282e-6■■■■■ 36.4
SF3B1O75533 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.163e-6■■■■■ 36.4
SF3B1O75533 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.083e-6■■■■■ 36.4
SF3B1O75533 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.062e-6■■■■■ 36.4
SF3B1O75533 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.023e-6■■■■■ 36.4
SF3B1O75533 TGOLN2-206ENST00000444342 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.273e-6■■■■■ 36.4
SF3B1O75533 TGOLN2-202ENST00000377386 6489 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.573e-6■■■■■ 36.4
SF3B1O75533 TGOLN2-201ENST00000282120 6419 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.753e-6■■■■■ 36.4
SF3B1O75533 SLC25A37-202ENST00000417331 735 ntTSL 521.41■■□□□ 1.023e-7■■■■■ 36.4
SF3B1O75533 SLC25A37-212ENST00000523930 823 ntTSL 515.9■□□□□ 0.143e-7■■■■■ 36.4
SF3B1O75533 ZKSCAN8-204ENST00000606198 2057 ntTSL 1 (best)8.86□□□□□ -0.994e-6■■■■■ 36.4
SF3B1O75533 ZKSCAN8-202ENST00000457389 2071 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.054e-6■■■■■ 36.4
SF3B1O75533 ZKSCAN8-203ENST00000536028 1052 ntTSL 26.87□□□□□ -1.314e-6■■■■■ 36.4
SF3B1O75533 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.64e-6■■■■■ 36.4
SF3B1O75533 PPP2R5C-213ENST00000554504 448 ntTSL 36.07□□□□□ -1.441e-6■■■■■ 36.3
SF3B1O75533 ANKRD12-204ENST00000540578 1338 ntTSL 1 (best)14.48□□□□□ -0.092e-6■■■■■ 36.3
SF3B1O75533 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.312e-6■■■■■ 36.3
SF3B1O75533 NF1-216ENST00000495910 8223 ntTSL 25.45□□□□□ -1.542e-6■■■■■ 36.3
Retrieved 100 of 46,956 protein–RNA pairs in 4108.7 ms