RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 AEBP2Q6ZN18 517 aaPredicted RBP24.09■■□□□ 1.45
UBR1-208ENST00000569066 CHIC1Q5VXU3 224 aa23.98■■□□□ 1.43
UBR1-208ENST00000569066 PHF23Q9BUL5 403 aaPredicted RBP21.3■■□□□ 1
UBR1-208ENST00000569066 SENP3Q9H4L4 574 aaPredicted RBP20.11■□□□□ 0.81
UBR1-208ENST00000569066 PLPPR3Q6T4P5 718 aa19.7■□□□□ 0.74
UBR1-208ENST00000569066 FOXD1Q16676 465 aa18.74■□□□□ 0.59
UBR1-208ENST00000569066 ADRA2BP18089 450 aa18.69■□□□□ 0.58
UBR1-208ENST00000569066 PPP6R1Q9UPN7 881 aa18.63■□□□□ 0.57
UBR1-208ENST00000569066 KCNA4P22459 653 aa17.95■□□□□ 0.46
UBR1-208ENST00000569066 PIAS4Q8N2W9 510 aaPredicted RBP17.81■□□□□ 0.44
UBR1-208ENST00000569066 EHMT2Q96KQ7 1210 aa17.51■□□□□ 0.39
UBR1-208ENST00000569066 PPP4R3CPQ6ZMV5 832 aa17.5■□□□□ 0.39
UBR1-208ENST00000569066 SLC4A1APQ9BWU0 796 aaKnown RBP17.1■□□□□ 0.33
UBR1-208ENST00000569066 NCBP3Q53F19 620 aaKnown RBP17.07■□□□□ 0.32
UBR1-208ENST00000569066 NPM3O75607 178 aaKnown RBP17.03■□□□□ 0.32
UBR1-208ENST00000569066 CSRNP3Q8WYN3 585 aa16.95■□□□□ 0.3
UBR1-208ENST00000569066 MSH5O43196 834 aa16.84■□□□□ 0.29
UBR1-208ENST00000569066 CNKSR2Q8WXI2 1034 aa16.8■□□□□ 0.28
UBR1-208ENST00000569066 MAPK8IP2Q13387 824 aaPredicted RBP16.74■□□□□ 0.27
UBR1-208ENST00000569066 SCAF1Q9H7N4 1312 aaKnown RBP16.73■□□□□ 0.27
UBR1-208ENST00000569066 ZBTB22O15209 634 aa16.59■□□□□ 0.25
UBR1-208ENST00000569066 RNF216Q9NWF9 866 aaPredicted RBP16.31■□□□□ 0.2
UBR1-208ENST00000569066 DNAJC5BQ9UF47 199 aa16.21■□□□□ 0.19
UBR1-208ENST00000569066 FOXD4L1Q9NU39 408 aa16.19■□□□□ 0.18
UBR1-208ENST00000569066 DMRT2Q9Y5R5 561 aa16.19■□□□□ 0.18
UBR1-208ENST00000569066 HOXD11P31277 338 aaPredicted RBP16.1■□□□□ 0.17
UBR1-208ENST00000569066 SLC4A2P04920 1241 aa15.97■□□□□ 0.15
UBR1-208ENST00000569066 MYCNP04198 464 aaPredicted RBP15.61■□□□□ 0.09
UBR1-208ENST00000569066 DCAF8L1A6NGE4 600 aa15.56■□□□□ 0.08
UBR1-208ENST00000569066 ATXN8OSP0DMR3 200 aa15.44■□□□□ 0.06
UBR1-208ENST00000569066 ATF5Q9Y2D1 282 aaPredicted RBP15.37■□□□□ 0.05
UBR1-208ENST00000569066 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.36■□□□□ 0.05
UBR1-208ENST00000569066 FKBP8Q14318 412 aa15.27■□□□□ 0.03
UBR1-208ENST00000569066 U3KPZ7 1027 aaPredicted RBP15.27■□□□□ 0.03
UBR1-208ENST00000569066 RTN4Q9NQC3 1192 aaKnown RBP15.11■□□□□ 0.01
UBR1-208ENST00000569066 SAMD1Q6SPF0 538 aaPredicted RBP15.09■□□□□ 0.01
UBR1-208ENST00000569066 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.05■□□□□ 0
UBR1-208ENST00000569066 HNRNPUL2Q1KMD3 747 aaKnown RBP15.05■□□□□ 0
UBR1-208ENST00000569066 AMER1Q5JTC6 1135 aaPredicted RBP14.9□□□□□ -0.02
UBR1-208ENST00000569066 ZNF219Q9P2Y4 722 aaPredicted RBP14.88□□□□□ -0.03
UBR1-208ENST00000569066 SPINK5Q9NQ38 1064 aaPredicted RBP14.72□□□□□ -0.05
UBR1-208ENST00000569066 MKRN4PQ13434 485 aaPredicted RBP14.68□□□□□ -0.06
UBR1-208ENST00000569066 TRHP20396 242 aaPredicted RBP14.66□□□□□ -0.06
UBR1-208ENST00000569066 APLP2Q06481 763 aa14.66□□□□□ -0.06
UBR1-208ENST00000569066 RNF39Q9H2S5 420 aa14.6□□□□□ -0.07
UBR1-208ENST00000569066 SLC24A1O60721 1099 aa14.58□□□□□ -0.08
UBR1-208ENST00000569066 SPDYE4A6NLX3 237 aa14.57□□□□□ -0.08
UBR1-208ENST00000569066 POLA2Q14181 598 aa14.55□□□□□ -0.08
UBR1-208ENST00000569066 CAPN15O75808 1086 aa14.53□□□□□ -0.08
UBR1-208ENST00000569066 FBLN2P98095 1184 aa14.41□□□□□ -0.1
UBR1-208ENST00000569066 ABCB7O75027 752 aa14.4□□□□□ -0.1
UBR1-208ENST00000569066 PROM2Q8N271 834 aa14.39□□□□□ -0.11
UBR1-208ENST00000569066 POTEDQ86YR6 584 aa14.38□□□□□ -0.11
UBR1-208ENST00000569066 C1QBPQ07021 282 aaKnown RBP14.35□□□□□ -0.11
UBR1-208ENST00000569066 FBXO3Q9UK99 471 aa14.33□□□□□ -0.12
UBR1-208ENST00000569066 VASPP50552 380 aaPredicted RBP14.27□□□□□ -0.12
UBR1-208ENST00000569066 IFNLR1Q8IU57 520 aaPredicted RBP14.2□□□□□ -0.14
UBR1-208ENST00000569066 DSG3P32926 999 aa14.14□□□□□ -0.15
UBR1-208ENST00000569066 ZBTB12Q9Y330 459 aaPredicted RBP14.13□□□□□ -0.15
UBR1-208ENST00000569066 OSCARQ8IYS5 282 aa14.08□□□□□ -0.16
UBR1-208ENST00000569066 ZNF692Q9BU19 519 aaPredicted RBP14.01□□□□□ -0.17
UBR1-208ENST00000569066 PKD2Q13563 968 aa13.97□□□□□ -0.17
UBR1-208ENST00000569066 DCAF8L2P0C7V8 631 aa13.92□□□□□ -0.18
UBR1-208ENST00000569066 SSUH2Q9Y2M2 353 aa13.92□□□□□ -0.18
UBR1-208ENST00000569066 PABPN1Q86U42 306 aaKnown RBP eCLIP13.89□□□□□ -0.19
UBR1-208ENST00000569066 SPDYE2BA6NHP3 402 aa13.89□□□□□ -0.19
UBR1-208ENST00000569066 SPDYE6P0CI01 402 aa13.89□□□□□ -0.19
UBR1-208ENST00000569066 SPDYE2Q495Y8 402 aa13.89□□□□□ -0.19
UBR1-208ENST00000569066 KLHL34Q8N239 644 aa13.85□□□□□ -0.19
UBR1-208ENST00000569066 PLCB2Q00722 1185 aa13.84□□□□□ -0.19
UBR1-208ENST00000569066 SPOCK2Q92563 424 aa13.78□□□□□ -0.2
UBR1-208ENST00000569066 PLCD3Q8N3E9 789 aa13.78□□□□□ -0.2
UBR1-208ENST00000569066 STAG3Q9UJ98 1225 aa13.75□□□□□ -0.21
UBR1-208ENST00000569066 CACNB1Q02641 598 aaPredicted RBP13.74□□□□□ -0.21
UBR1-208ENST00000569066 MIER1Q8N108 512 aa13.73□□□□□ -0.21
UBR1-208ENST00000569066 ECM2O94769 699 aaPredicted RBP13.69□□□□□ -0.22
UBR1-208ENST00000569066 HAP1P54257 671 aaPredicted RBP13.67□□□□□ -0.22
UBR1-208ENST00000569066 RGL2O15211 777 aa13.64□□□□□ -0.23
UBR1-208ENST00000569066 NPM1P06748 294 aaKnown RBP eCLIP13.64□□□□□ -0.23
UBR1-208ENST00000569066 CIZ1Q9ULV3 898 aaPredicted RBP13.55□□□□□ -0.24
UBR1-208ENST00000569066 BBXQ8WY36 941 aaPredicted RBP13.46□□□□□ -0.25
UBR1-208ENST00000569066 PAXIP1Q6ZW49 1069 aaPredicted RBP13.46□□□□□ -0.26
UBR1-208ENST00000569066 PLEKHG5O94827 1062 aa13.45□□□□□ -0.26
UBR1-208ENST00000569066 CFAP44Q96MT7 982 aa13.44□□□□□ -0.26
UBR1-208ENST00000569066 ZBTB47Q9UFB7 747 aaPredicted RBP13.42□□□□□ -0.26
UBR1-208ENST00000569066 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.42□□□□□ -0.26
UBR1-208ENST00000569066 CHGAP10645 457 aaKnown RBP13.39□□□□□ -0.27
UBR1-208ENST00000569066 KDM2AQ9Y2K7 1162 aa13.39□□□□□ -0.27
UBR1-208ENST00000569066 RNF25Q96BH1 459 aaPredicted RBP13.38□□□□□ -0.27
UBR1-208ENST00000569066 CLEC11AQ9Y240 323 aa13.37□□□□□ -0.27
UBR1-208ENST00000569066 NUBP1P53384 320 aa13.34□□□□□ -0.27
UBR1-208ENST00000569066 VSIG10Q8N0Z9 540 aa13.33□□□□□ -0.28
UBR1-208ENST00000569066 SPDYE1Q8NFV5 336 aaPredicted RBP13.33□□□□□ -0.28
UBR1-208ENST00000569066 AKT1S1Q96B36 256 aa13.31□□□□□ -0.28
UBR1-208ENST00000569066 CREBZFQ9NS37 354 aa13.29□□□□□ -0.28
UBR1-208ENST00000569066 RBM42Q9BTD8 480 aaKnown RBP13.29□□□□□ -0.28
UBR1-208ENST00000569066 TSHZ2Q9NRE2 1034 aa13.28□□□□□ -0.28
UBR1-208ENST00000569066 MNX1P50219 401 aaPredicted RBP13.28□□□□□ -0.28
UBR1-208ENST00000569066 REM2Q8IYK8 340 aaPredicted RBP13.28□□□□□ -0.28
UBR1-208ENST00000569066 SPRYD3Q8NCJ5 442 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms