Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA1Q9Y5H4 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA1Q9Y5H4 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA1Q9Y5H4 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA1Q9Y5H4 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
PCDHGA1Q9Y5H4 CNN2P6-201ENST00000439038 900 ntBASIC20.85■□□□□ 0.93
PCDHGA1Q9Y5H4 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.85■□□□□ 0.93
PCDHGA1Q9Y5H4 AC105036.2-201ENST00000569468 176 ntBASIC20.85■□□□□ 0.93
PCDHGA1Q9Y5H4 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.85■□□□□ 0.93
PCDHGA1Q9Y5H4 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
PCDHGA1Q9Y5H4 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA1Q9Y5H4 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.85■□□□□ 0.93
PCDHGA1Q9Y5H4 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
PCDHGA1Q9Y5H4 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.85■□□□□ 0.93
PCDHGA1Q9Y5H4 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.85■□□□□ 0.93
PCDHGA1Q9Y5H4 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA1Q9Y5H4 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA1Q9Y5H4 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA1Q9Y5H4 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHGA1Q9Y5H4 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC20.84■□□□□ 0.93
PCDHGA1Q9Y5H4 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHGA1Q9Y5H4 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.84■□□□□ 0.93
PCDHGA1Q9Y5H4 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.84■□□□□ 0.93
PCDHGA1Q9Y5H4 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHGA1Q9Y5H4 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHGA1Q9Y5H4 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA1Q9Y5H4 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.83■□□□□ 0.93
PCDHGA1Q9Y5H4 DUSP8P3-201ENST00000399571 1760 ntBASIC20.83■□□□□ 0.93
PCDHGA1Q9Y5H4 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
PCDHGA1Q9Y5H4 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.83■□□□□ 0.93
PCDHGA1Q9Y5H4 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.83■□□□□ 0.93
PCDHGA1Q9Y5H4 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PCDHGA1Q9Y5H4 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
PCDHGA1Q9Y5H4 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.83■□□□□ 0.92
PCDHGA1Q9Y5H4 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
PCDHGA1Q9Y5H4 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA1Q9Y5H4 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA1Q9Y5H4 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA1Q9Y5H4 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.82■□□□□ 0.92
PCDHGA1Q9Y5H4 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA1Q9Y5H4 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA1Q9Y5H4 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
PCDHGA1Q9Y5H4 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.82■□□□□ 0.92
PCDHGA1Q9Y5H4 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.82■□□□□ 0.92
PCDHGA1Q9Y5H4 MIR4758-201ENST00000577688 71 ntBASIC20.82■□□□□ 0.92
PCDHGA1Q9Y5H4 AC010536.3-201ENST00000620306 533 ntBASIC20.82■□□□□ 0.92
PCDHGA1Q9Y5H4 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.82■□□□□ 0.92
PCDHGA1Q9Y5H4 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA1Q9Y5H4 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA1Q9Y5H4 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA1Q9Y5H4 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA1Q9Y5H4 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
PCDHGA1Q9Y5H4 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA1Q9Y5H4 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA1Q9Y5H4 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA1Q9Y5H4 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA1Q9Y5H4 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
PCDHGA1Q9Y5H4 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA1Q9Y5H4 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.81■□□□□ 0.92
PCDHGA1Q9Y5H4 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.81■□□□□ 0.92
PCDHGA1Q9Y5H4 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.81■□□□□ 0.92
PCDHGA1Q9Y5H4 AC010141.2-201ENST00000452426 721 ntBASIC20.81■□□□□ 0.92
PCDHGA1Q9Y5H4 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA1Q9Y5H4 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.81■□□□□ 0.92
PCDHGA1Q9Y5H4 AC055733.4-201ENST00000638462 1354 ntBASIC20.81■□□□□ 0.92
PCDHGA1Q9Y5H4 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA1Q9Y5H4 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA1Q9Y5H4 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
PCDHGA1Q9Y5H4 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA1Q9Y5H4 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA1Q9Y5H4 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA1Q9Y5H4 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.8■□□□□ 0.92
PCDHGA1Q9Y5H4 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA1Q9Y5H4 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA1Q9Y5H4 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA1Q9Y5H4 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA1Q9Y5H4 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA1Q9Y5H4 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA1Q9Y5H4 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA1Q9Y5H4 AC138907.5-202ENST00000569484 235 ntBASIC20.8■□□□□ 0.92
PCDHGA1Q9Y5H4 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
PCDHGA1Q9Y5H4 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA1Q9Y5H4 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA1Q9Y5H4 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
PCDHGA1Q9Y5H4 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA1Q9Y5H4 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
PCDHGA1Q9Y5H4 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.79■□□□□ 0.92
PCDHGA1Q9Y5H4 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHGA1Q9Y5H4 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHGA1Q9Y5H4 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHGA1Q9Y5H4 POU5F1P3-201ENST00000428824 1078 ntBASIC20.79■□□□□ 0.92
PCDHGA1Q9Y5H4 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHGA1Q9Y5H4 SLC7A5P1-201ENST00000568957 537 ntBASIC20.79■□□□□ 0.92
PCDHGA1Q9Y5H4 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.79■□□□□ 0.92
PCDHGA1Q9Y5H4 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.79■□□□□ 0.92
PCDHGA1Q9Y5H4 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
PCDHGA1Q9Y5H4 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHGA1Q9Y5H4 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHGA1Q9Y5H4 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHGA1Q9Y5H4 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms