Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLCF1Q9UBD9 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.23■□□□□ 0.67
CLCF1Q9UBD9 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
CLCF1Q9UBD9 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLCF1Q9UBD9 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLCF1Q9UBD9 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLCF1Q9UBD9 LINC00526-201ENST00000581067 1875 ntBASIC19.23■□□□□ 0.67
CLCF1Q9UBD9 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLCF1Q9UBD9 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.23■□□□□ 0.67
CLCF1Q9UBD9 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.23■□□□□ 0.67
CLCF1Q9UBD9 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLCF1Q9UBD9 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CLCF1Q9UBD9 OR7E47P-201ENST00000546390 1422 ntBASIC19.23■□□□□ 0.67
CLCF1Q9UBD9 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLCF1Q9UBD9 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLCF1Q9UBD9 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.23■□□□□ 0.67
CLCF1Q9UBD9 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.23■□□□□ 0.67
CLCF1Q9UBD9 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLCF1Q9UBD9 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CLCF1Q9UBD9 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLCF1Q9UBD9 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLCF1Q9UBD9 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CLCF1Q9UBD9 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CLCF1Q9UBD9 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLCF1Q9UBD9 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.22■□□□□ 0.67
CLCF1Q9UBD9 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CLCF1Q9UBD9 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLCF1Q9UBD9 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLCF1Q9UBD9 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLCF1Q9UBD9 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLCF1Q9UBD9 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLCF1Q9UBD9 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLCF1Q9UBD9 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.21■□□□□ 0.67
CLCF1Q9UBD9 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLCF1Q9UBD9 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLCF1Q9UBD9 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CLCF1Q9UBD9 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLCF1Q9UBD9 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLCF1Q9UBD9 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.21■□□□□ 0.67
CLCF1Q9UBD9 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLCF1Q9UBD9 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.21■□□□□ 0.67
CLCF1Q9UBD9 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLCF1Q9UBD9 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLCF1Q9UBD9 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.21■□□□□ 0.67
CLCF1Q9UBD9 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
CLCF1Q9UBD9 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLCF1Q9UBD9 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC19.2■□□□□ 0.66
CLCF1Q9UBD9 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCF1Q9UBD9 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCF1Q9UBD9 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCF1Q9UBD9 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCF1Q9UBD9 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.2■□□□□ 0.66
CLCF1Q9UBD9 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.2■□□□□ 0.66
CLCF1Q9UBD9 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCF1Q9UBD9 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.2■□□□□ 0.66
CLCF1Q9UBD9 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.2■□□□□ 0.66
CLCF1Q9UBD9 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCF1Q9UBD9 AC137767.1-201ENST00000602918 1920 ntBASIC19.19■□□□□ 0.66
CLCF1Q9UBD9 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
CLCF1Q9UBD9 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CLCF1Q9UBD9 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CLCF1Q9UBD9 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCF1Q9UBD9 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCF1Q9UBD9 KRT19P1-201ENST00000405746 1186 ntBASIC19.19■□□□□ 0.66
CLCF1Q9UBD9 AC004911.1-201ENST00000416316 871 ntBASIC19.19■□□□□ 0.66
CLCF1Q9UBD9 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.19■□□□□ 0.66
CLCF1Q9UBD9 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.19■□□□□ 0.66
CLCF1Q9UBD9 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.19■□□□□ 0.66
CLCF1Q9UBD9 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLCF1Q9UBD9 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLCF1Q9UBD9 RARRES2P11-201ENST00000635158 484 ntBASIC19.19■□□□□ 0.66
CLCF1Q9UBD9 AP004607.7-201ENST00000527152 1677 ntBASIC19.19■□□□□ 0.66
CLCF1Q9UBD9 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCF1Q9UBD9 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CLCF1Q9UBD9 AC055733.4-201ENST00000638462 1354 ntBASIC19.19■□□□□ 0.66
CLCF1Q9UBD9 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 AC006015.1-201ENST00000429970 570 ntBASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 AL034346.1-201ENST00000568244 1277 ntBASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLCF1Q9UBD9 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLCF1Q9UBD9 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
CLCF1Q9UBD9 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms