Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
EXOSC3Q9NQT5 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
EXOSC3Q9NQT5 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
EXOSC3Q9NQT5 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.76■□□□□ 0.75
EXOSC3Q9NQT5 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
EXOSC3Q9NQT5 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
EXOSC3Q9NQT5 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
EXOSC3Q9NQT5 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
EXOSC3Q9NQT5 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
EXOSC3Q9NQT5 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
EXOSC3Q9NQT5 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.76■□□□□ 0.75
EXOSC3Q9NQT5 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.76■□□□□ 0.75
EXOSC3Q9NQT5 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC19.76■□□□□ 0.75
EXOSC3Q9NQT5 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.76■□□□□ 0.75
EXOSC3Q9NQT5 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
EXOSC3Q9NQT5 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.76■□□□□ 0.75
EXOSC3Q9NQT5 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
EXOSC3Q9NQT5 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
EXOSC3Q9NQT5 AC110285.6-201ENST00000617652 491 ntBASIC19.76■□□□□ 0.75
EXOSC3Q9NQT5 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
EXOSC3Q9NQT5 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
EXOSC3Q9NQT5 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
EXOSC3Q9NQT5 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
EXOSC3Q9NQT5 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 AC027682.1-201ENST00000562846 899 ntBASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 AC133561.4-201ENST00000566112 224 ntBASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
EXOSC3Q9NQT5 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
EXOSC3Q9NQT5 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.74■□□□□ 0.75
EXOSC3Q9NQT5 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
EXOSC3Q9NQT5 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
EXOSC3Q9NQT5 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
EXOSC3Q9NQT5 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
EXOSC3Q9NQT5 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
EXOSC3Q9NQT5 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.74■□□□□ 0.75
EXOSC3Q9NQT5 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.74■□□□□ 0.75
EXOSC3Q9NQT5 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
EXOSC3Q9NQT5 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
EXOSC3Q9NQT5 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
EXOSC3Q9NQT5 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.74■□□□□ 0.75
EXOSC3Q9NQT5 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
EXOSC3Q9NQT5 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.74■□□□□ 0.75
EXOSC3Q9NQT5 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
EXOSC3Q9NQT5 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 AL024507.2-201ENST00000606070 2574 ntBASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 AL355001.2-201ENST00000620617 1191 ntBASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 LINC00565-201ENST00000562710 2331 ntBASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.73■□□□□ 0.75
EXOSC3Q9NQT5 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
EXOSC3Q9NQT5 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
EXOSC3Q9NQT5 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
EXOSC3Q9NQT5 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
EXOSC3Q9NQT5 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.72■□□□□ 0.75
EXOSC3Q9NQT5 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.72■□□□□ 0.75
EXOSC3Q9NQT5 IGHV3-19-201ENST00000521488 291 ntBASIC19.72■□□□□ 0.75
EXOSC3Q9NQT5 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.72■□□□□ 0.75
EXOSC3Q9NQT5 AL034346.1-201ENST00000568244 1277 ntBASIC19.72■□□□□ 0.75
EXOSC3Q9NQT5 AC126544.1-201ENST00000580842 1059 ntBASIC19.72■□□□□ 0.75
EXOSC3Q9NQT5 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.72■□□□□ 0.75
EXOSC3Q9NQT5 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
EXOSC3Q9NQT5 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
EXOSC3Q9NQT5 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.72■□□□□ 0.75
EXOSC3Q9NQT5 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms