Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
VCX3AQ9NNX9 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.15■□□□□ 0.82
VCX3AQ9NNX9 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VCX3AQ9NNX9 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC20.15■□□□□ 0.82
VCX3AQ9NNX9 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
VCX3AQ9NNX9 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VCX3AQ9NNX9 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
VCX3AQ9NNX9 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.14■□□□□ 0.82
VCX3AQ9NNX9 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
VCX3AQ9NNX9 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VCX3AQ9NNX9 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.14■□□□□ 0.81
VCX3AQ9NNX9 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.14■□□□□ 0.81
VCX3AQ9NNX9 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VCX3AQ9NNX9 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.14■□□□□ 0.81
VCX3AQ9NNX9 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
VCX3AQ9NNX9 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VCX3AQ9NNX9 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
VCX3AQ9NNX9 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
VCX3AQ9NNX9 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VCX3AQ9NNX9 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VCX3AQ9NNX9 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
VCX3AQ9NNX9 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
VCX3AQ9NNX9 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 AC090877.2-201ENST00000558441 1738 ntBASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 ALDH1A3-203ENST00000557963 1670 ntBASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.13■□□□□ 0.81
VCX3AQ9NNX9 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
VCX3AQ9NNX9 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.12■□□□□ 0.81
VCX3AQ9NNX9 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VCX3AQ9NNX9 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC20.12■□□□□ 0.81
VCX3AQ9NNX9 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VCX3AQ9NNX9 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.12■□□□□ 0.81
VCX3AQ9NNX9 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.12■□□□□ 0.81
VCX3AQ9NNX9 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
VCX3AQ9NNX9 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
VCX3AQ9NNX9 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
VCX3AQ9NNX9 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.12■□□□□ 0.81
VCX3AQ9NNX9 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VCX3AQ9NNX9 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VCX3AQ9NNX9 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
VCX3AQ9NNX9 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VCX3AQ9NNX9 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
VCX3AQ9NNX9 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VCX3AQ9NNX9 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
VCX3AQ9NNX9 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.11■□□□□ 0.81
VCX3AQ9NNX9 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.11■□□□□ 0.81
VCX3AQ9NNX9 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
VCX3AQ9NNX9 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VCX3AQ9NNX9 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VCX3AQ9NNX9 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VCX3AQ9NNX9 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.11■□□□□ 0.81
VCX3AQ9NNX9 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
VCX3AQ9NNX9 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.11■□□□□ 0.81
VCX3AQ9NNX9 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
VCX3AQ9NNX9 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VCX3AQ9NNX9 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VCX3AQ9NNX9 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
VCX3AQ9NNX9 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
VCX3AQ9NNX9 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VCX3AQ9NNX9 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VCX3AQ9NNX9 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VCX3AQ9NNX9 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
VCX3AQ9NNX9 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VCX3AQ9NNX9 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VCX3AQ9NNX9 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.1■□□□□ 0.81
VCX3AQ9NNX9 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.1■□□□□ 0.81
VCX3AQ9NNX9 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VCX3AQ9NNX9 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VCX3AQ9NNX9 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.1■□□□□ 0.81
VCX3AQ9NNX9 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
VCX3AQ9NNX9 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VCX3AQ9NNX9 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VCX3AQ9NNX9 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.1■□□□□ 0.81
VCX3AQ9NNX9 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.1■□□□□ 0.81
VCX3AQ9NNX9 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.1■□□□□ 0.81
VCX3AQ9NNX9 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VCX3AQ9NNX9 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.09■□□□□ 0.81
VCX3AQ9NNX9 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VCX3AQ9NNX9 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
VCX3AQ9NNX9 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VCX3AQ9NNX9 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms