Protein–RNA interactions for Protein: Q9HBD1

RC3H2, Roquin-2, humanhuman

Known RBP Predictions only

Length 1,191 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H2Q9HBD1 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC23.29■■□□□ 1.32
RC3H2Q9HBD1 SERP1-208ENST00000491660 830 ntTSL 2 BASIC23.29■■□□□ 1.32
RC3H2Q9HBD1 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC23.29■■□□□ 1.32
RC3H2Q9HBD1 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
RC3H2Q9HBD1 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC23.29■■□□□ 1.32
RC3H2Q9HBD1 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC23.29■■□□□ 1.32
RC3H2Q9HBD1 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
RC3H2Q9HBD1 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC23.29■■□□□ 1.32
RC3H2Q9HBD1 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
RC3H2Q9HBD1 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
RC3H2Q9HBD1 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
RC3H2Q9HBD1 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC23.28■■□□□ 1.32
RC3H2Q9HBD1 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
RC3H2Q9HBD1 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
RC3H2Q9HBD1 APTR-203ENST00000430801 583 ntTSL 5 BASIC23.28■■□□□ 1.32
RC3H2Q9HBD1 UQCRFS1P1-201ENST00000435169 820 ntBASIC23.28■■□□□ 1.32
RC3H2Q9HBD1 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC23.28■■□□□ 1.32
RC3H2Q9HBD1 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC23.28■■□□□ 1.32
RC3H2Q9HBD1 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC23.28■■□□□ 1.32
RC3H2Q9HBD1 MIR4651-201ENST00000582622 73 ntBASIC23.28■■□□□ 1.32
RC3H2Q9HBD1 AC066615.1-201ENST00000640911 628 ntBASIC23.28■■□□□ 1.32
RC3H2Q9HBD1 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
RC3H2Q9HBD1 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
RC3H2Q9HBD1 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
RC3H2Q9HBD1 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC23.28■■□□□ 1.32
RC3H2Q9HBD1 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
RC3H2Q9HBD1 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
RC3H2Q9HBD1 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
RC3H2Q9HBD1 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC23.27■■□□□ 1.32
RC3H2Q9HBD1 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
RC3H2Q9HBD1 AC073210.2-201ENST00000430369 194 ntBASIC23.27■■□□□ 1.32
RC3H2Q9HBD1 AC010141.2-201ENST00000452426 721 ntBASIC23.27■■□□□ 1.32
RC3H2Q9HBD1 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC23.27■■□□□ 1.32
RC3H2Q9HBD1 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC23.27■■□□□ 1.32
RC3H2Q9HBD1 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
RC3H2Q9HBD1 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
RC3H2Q9HBD1 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC23.26■■□□□ 1.31
RC3H2Q9HBD1 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RC3H2Q9HBD1 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RC3H2Q9HBD1 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC23.26■■□□□ 1.31
RC3H2Q9HBD1 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC23.26■■□□□ 1.31
RC3H2Q9HBD1 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC23.26■■□□□ 1.31
RC3H2Q9HBD1 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC23.26■■□□□ 1.31
RC3H2Q9HBD1 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC23.26■■□□□ 1.31
RC3H2Q9HBD1 AC133552.2-202ENST00000575694 574 ntBASIC23.26■■□□□ 1.31
RC3H2Q9HBD1 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC23.26■■□□□ 1.31
RC3H2Q9HBD1 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RC3H2Q9HBD1 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC23.26■■□□□ 1.31
RC3H2Q9HBD1 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RC3H2Q9HBD1 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RC3H2Q9HBD1 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RC3H2Q9HBD1 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC23.25■■□□□ 1.31
RC3H2Q9HBD1 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC23.25■■□□□ 1.31
RC3H2Q9HBD1 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
RC3H2Q9HBD1 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
RC3H2Q9HBD1 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
RC3H2Q9HBD1 SLC29A4P1-201ENST00000398760 971 ntBASIC23.25■■□□□ 1.31
RC3H2Q9HBD1 RGMA-211ENST00000557420 989 ntTSL 3 BASIC23.25■■□□□ 1.31
RC3H2Q9HBD1 AC138907.5-202ENST00000569484 235 ntBASIC23.25■■□□□ 1.31
RC3H2Q9HBD1 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC23.25■■□□□ 1.31
RC3H2Q9HBD1 PFKL-212ENST00000628044 129 ntTSL 3 BASIC23.25■■□□□ 1.31
RC3H2Q9HBD1 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
RC3H2Q9HBD1 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
RC3H2Q9HBD1 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
RC3H2Q9HBD1 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RC3H2Q9HBD1 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
RC3H2Q9HBD1 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RC3H2Q9HBD1 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC23.24■■□□□ 1.31
RC3H2Q9HBD1 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
RC3H2Q9HBD1 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC23.24■■□□□ 1.31
RC3H2Q9HBD1 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
RC3H2Q9HBD1 AC098934.4-201ENST00000564127 592 ntBASIC23.24■■□□□ 1.31
RC3H2Q9HBD1 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
RC3H2Q9HBD1 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC23.24■■□□□ 1.31
RC3H2Q9HBD1 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC23.24■■□□□ 1.31
RC3H2Q9HBD1 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
RC3H2Q9HBD1 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
RC3H2Q9HBD1 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RC3H2Q9HBD1 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC23.23■■□□□ 1.31
RC3H2Q9HBD1 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC23.23■■□□□ 1.31
RC3H2Q9HBD1 AF201337.1-201ENST00000520239 748 ntBASIC23.23■■□□□ 1.31
RC3H2Q9HBD1 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC23.23■■□□□ 1.31
RC3H2Q9HBD1 KRT18P20-201ENST00000548986 1279 ntBASIC23.23■■□□□ 1.31
RC3H2Q9HBD1 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RC3H2Q9HBD1 AC010536.3-201ENST00000620306 533 ntBASIC23.23■■□□□ 1.31
RC3H2Q9HBD1 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RC3H2Q9HBD1 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC23.22■■□□□ 1.31
RC3H2Q9HBD1 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC23.22■■□□□ 1.31
RC3H2Q9HBD1 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RC3H2Q9HBD1 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
RC3H2Q9HBD1 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC23.22■■□□□ 1.31
RC3H2Q9HBD1 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
RC3H2Q9HBD1 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
RC3H2Q9HBD1 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC23.22■■□□□ 1.31
RC3H2Q9HBD1 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RC3H2Q9HBD1 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RC3H2Q9HBD1 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
RC3H2Q9HBD1 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RC3H2Q9HBD1 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC23.21■■□□□ 1.31
RC3H2Q9HBD1 AC079089.2-201ENST00000531211 1277 ntBASIC23.21■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms