Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CFAP54Q96N23 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
CFAP54Q96N23 AC097493.4-201ENST00000641197 219 ntBASIC21.44■■□□□ 1.02
CFAP54Q96N23 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CFAP54Q96N23 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
CFAP54Q96N23 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CFAP54Q96N23 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CFAP54Q96N23 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CFAP54Q96N23 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC21.44■■□□□ 1.02
CFAP54Q96N23 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC21.44■■□□□ 1.02
CFAP54Q96N23 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC21.44■■□□□ 1.02
CFAP54Q96N23 RN7SL850P-201ENST00000579959 291 ntBASIC21.44■■□□□ 1.02
CFAP54Q96N23 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
CFAP54Q96N23 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CFAP54Q96N23 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
CFAP54Q96N23 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CFAP54Q96N23 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.44■■□□□ 1.02
CFAP54Q96N23 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CFAP54Q96N23 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21.43■■□□□ 1.02
CFAP54Q96N23 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.43■■□□□ 1.02
CFAP54Q96N23 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CFAP54Q96N23 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CFAP54Q96N23 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CFAP54Q96N23 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
CFAP54Q96N23 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CFAP54Q96N23 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CFAP54Q96N23 RNF121-214ENST00000533380 870 ntTSL 3 BASIC21.43■■□□□ 1.02
CFAP54Q96N23 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.43■■□□□ 1.02
CFAP54Q96N23 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CFAP54Q96N23 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21.42■■□□□ 1.02
CFAP54Q96N23 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.42■■□□□ 1.02
CFAP54Q96N23 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.42■■□□□ 1.02
CFAP54Q96N23 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CFAP54Q96N23 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.42■■□□□ 1.02
CFAP54Q96N23 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CFAP54Q96N23 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CFAP54Q96N23 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CFAP54Q96N23 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CFAP54Q96N23 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CFAP54Q96N23 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
CFAP54Q96N23 AC010536.3-201ENST00000620306 533 ntBASIC21.41■■□□□ 1.02
CFAP54Q96N23 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CFAP54Q96N23 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CFAP54Q96N23 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CFAP54Q96N23 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CFAP54Q96N23 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.41■■□□□ 1.02
CFAP54Q96N23 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CFAP54Q96N23 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.41■■□□□ 1.02
CFAP54Q96N23 MYCNOS-205ENST00000641950 531 ntBASIC21.41■■□□□ 1.02
CFAP54Q96N23 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.41■■□□□ 1.02
CFAP54Q96N23 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CFAP54Q96N23 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.4■■□□□ 1.02
CFAP54Q96N23 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC21.4■■□□□ 1.02
CFAP54Q96N23 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.4■■□□□ 1.02
CFAP54Q96N23 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC21.4■■□□□ 1.02
CFAP54Q96N23 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.4■■□□□ 1.02
CFAP54Q96N23 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CFAP54Q96N23 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
CFAP54Q96N23 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.4■■□□□ 1.02
CFAP54Q96N23 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.4■■□□□ 1.02
CFAP54Q96N23 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC21.4■■□□□ 1.02
CFAP54Q96N23 AC012306.2-201ENST00000609350 630 ntBASIC21.4■■□□□ 1.02
CFAP54Q96N23 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CFAP54Q96N23 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
CFAP54Q96N23 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.39■■□□□ 1.02
CFAP54Q96N23 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CFAP54Q96N23 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CFAP54Q96N23 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
CFAP54Q96N23 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CFAP54Q96N23 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CFAP54Q96N23 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC21.39■■□□□ 1.01
CFAP54Q96N23 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.39■■□□□ 1.01
CFAP54Q96N23 AP003097.1-201ENST00000530657 1135 ntBASIC21.39■■□□□ 1.01
CFAP54Q96N23 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
CFAP54Q96N23 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
CFAP54Q96N23 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
CFAP54Q96N23 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CFAP54Q96N23 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC21.39■■□□□ 1.01
CFAP54Q96N23 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
CFAP54Q96N23 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.39■■□□□ 1.01
CFAP54Q96N23 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CFAP54Q96N23 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
CFAP54Q96N23 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CFAP54Q96N23 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CFAP54Q96N23 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.38■■□□□ 1.01
CFAP54Q96N23 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CFAP54Q96N23 HLA-L-211ENST00000482052 1765 ntBASIC21.38■■□□□ 1.01
CFAP54Q96N23 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CFAP54Q96N23 CYP2T1P-201ENST00000432607 1285 ntBASIC21.38■■□□□ 1.01
CFAP54Q96N23 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CFAP54Q96N23 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CFAP54Q96N23 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.38■■□□□ 1.01
CFAP54Q96N23 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CFAP54Q96N23 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CFAP54Q96N23 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.37■■□□□ 1.01
CFAP54Q96N23 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC21.37■■□□□ 1.01
CFAP54Q96N23 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CFAP54Q96N23 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CFAP54Q96N23 AC068338.2-201ENST00000563278 1430 ntBASIC21.37■■□□□ 1.01
CFAP54Q96N23 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms