Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC22.4■■□□□ 1.18
TTC28Q96AY4 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC22.4■■□□□ 1.18
TTC28Q96AY4 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
TTC28Q96AY4 AC055733.4-201ENST00000638462 1354 ntBASIC22.4■■□□□ 1.18
TTC28Q96AY4 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC22.4■■□□□ 1.18
TTC28Q96AY4 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
TTC28Q96AY4 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
TTC28Q96AY4 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
TTC28Q96AY4 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC22.39■■□□□ 1.18
TTC28Q96AY4 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC22.39■■□□□ 1.18
TTC28Q96AY4 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC22.39■■□□□ 1.18
TTC28Q96AY4 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
TTC28Q96AY4 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
TTC28Q96AY4 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC22.39■■□□□ 1.17
TTC28Q96AY4 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC22.39■■□□□ 1.17
TTC28Q96AY4 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
TTC28Q96AY4 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC22.39■■□□□ 1.17
TTC28Q96AY4 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.17
TTC28Q96AY4 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
TTC28Q96AY4 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
TTC28Q96AY4 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
TTC28Q96AY4 MFF-207ENST00000409565 1548 ntTSL 2 BASIC22.38■■□□□ 1.17
TTC28Q96AY4 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
TTC28Q96AY4 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC22.38■■□□□ 1.17
TTC28Q96AY4 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC22.38■■□□□ 1.17
TTC28Q96AY4 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
TTC28Q96AY4 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
TTC28Q96AY4 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC22.38■■□□□ 1.17
TTC28Q96AY4 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
TTC28Q96AY4 AC087499.1-201ENST00000418141 1075 ntBASIC22.38■■□□□ 1.17
TTC28Q96AY4 AC010141.2-201ENST00000452426 721 ntBASIC22.38■■□□□ 1.17
TTC28Q96AY4 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
TTC28Q96AY4 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC22.38■■□□□ 1.17
TTC28Q96AY4 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC22.38■■□□□ 1.17
TTC28Q96AY4 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
TTC28Q96AY4 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC22.37■■□□□ 1.17
TTC28Q96AY4 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
TTC28Q96AY4 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC22.37■■□□□ 1.17
TTC28Q96AY4 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
TTC28Q96AY4 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
TTC28Q96AY4 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC22.37■■□□□ 1.17
TTC28Q96AY4 C1QBPP2-201ENST00000528754 825 ntBASIC22.37■■□□□ 1.17
TTC28Q96AY4 EI24-211ENST00000534546 1544 ntTSL 2 BASIC22.37■■□□□ 1.17
TTC28Q96AY4 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
TTC28Q96AY4 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
TTC28Q96AY4 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC22.36■■□□□ 1.17
TTC28Q96AY4 AC008403.3-201ENST00000598924 454 ntBASIC22.36■■□□□ 1.17
TTC28Q96AY4 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC22.36■■□□□ 1.17
TTC28Q96AY4 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC22.36■■□□□ 1.17
TTC28Q96AY4 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
TTC28Q96AY4 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
TTC28Q96AY4 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC22.36■■□□□ 1.17
TTC28Q96AY4 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC22.36■■□□□ 1.17
TTC28Q96AY4 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
TTC28Q96AY4 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC22.36■■□□□ 1.17
TTC28Q96AY4 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC22.36■■□□□ 1.17
TTC28Q96AY4 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
TTC28Q96AY4 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC22.36■■□□□ 1.17
TTC28Q96AY4 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
TTC28Q96AY4 TERF1P5-201ENST00000477545 1207 ntBASIC22.35■■□□□ 1.17
TTC28Q96AY4 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC22.35■■□□□ 1.17
TTC28Q96AY4 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
TTC28Q96AY4 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC22.35■■□□□ 1.17
TTC28Q96AY4 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
TTC28Q96AY4 LINC01529-204ENST00000636474 1715 ntBASIC22.35■■□□□ 1.17
TTC28Q96AY4 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC22.35■■□□□ 1.17
TTC28Q96AY4 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TTC28Q96AY4 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC22.35■■□□□ 1.17
TTC28Q96AY4 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC22.35■■□□□ 1.17
TTC28Q96AY4 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
TTC28Q96AY4 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
TTC28Q96AY4 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
TTC28Q96AY4 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
TTC28Q96AY4 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC22.34■■□□□ 1.17
TTC28Q96AY4 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
TTC28Q96AY4 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
TTC28Q96AY4 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC22.34■■□□□ 1.17
TTC28Q96AY4 PRKY-204ENST00000533551 1019 ntBASIC22.34■■□□□ 1.17
TTC28Q96AY4 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC22.34■■□□□ 1.17
TTC28Q96AY4 AL161729.1-201ENST00000604104 1402 ntBASIC22.34■■□□□ 1.17
TTC28Q96AY4 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
TTC28Q96AY4 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
TTC28Q96AY4 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
TTC28Q96AY4 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
TTC28Q96AY4 BMP1-204ENST00000397814 836 ntTSL 4 BASIC22.33■■□□□ 1.17
TTC28Q96AY4 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
TTC28Q96AY4 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC22.33■■□□□ 1.17
TTC28Q96AY4 FAM197Y4-202ENST00000622692 608 ntBASIC22.33■■□□□ 1.17
TTC28Q96AY4 AL590326.2-201ENST00000625139 305 ntBASIC22.33■■□□□ 1.17
TTC28Q96AY4 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC22.33■■□□□ 1.17
TTC28Q96AY4 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
TTC28Q96AY4 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC22.33■■□□□ 1.16
TTC28Q96AY4 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
TTC28Q96AY4 SPIB-206ENST00000596074 847 ntTSL 2 BASIC22.33■■□□□ 1.16
TTC28Q96AY4 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC22.32■■□□□ 1.16
TTC28Q96AY4 AC233702.5-201ENST00000584107 538 ntBASIC22.32■■□□□ 1.16
TTC28Q96AY4 AC092865.7-201ENST00000641832 219 ntBASIC22.32■■□□□ 1.16
TTC28Q96AY4 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
TTC28Q96AY4 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
TTC28Q96AY4 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms